RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CYB561D1Q8N8Q1 229 aa14.02□□□□□ -0.17
SHMT2-232ENST00000557487 GTF3AQ92664 365 aaKnown RBP14.02□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF837Q96EG3 531 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-232ENST00000557487 PRDM14Q9GZV8 571 aa14.02□□□□□ -0.17
SHMT2-232ENST00000557487 CRLF2Q9HC73 371 aa14.02□□□□□ -0.17
SHMT2-232ENST00000557487 MMP24Q9Y5R2 645 aa14.02□□□□□ -0.17
SHMT2-232ENST00000557487 IGHV1-45A0A0A0MS14 117 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 TNFSF11O14788 317 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 PPP1R2P9O14990 202 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 NAPSAO96009 420 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 IFNA5P01569 189 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 CCL3P10147 92 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 NPBWR2P48146 333 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 ASCL1P50553 236 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 RND2P52198 227 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 NKX6-1P78426 367 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-232ENST00000557487 PSG4Q00888 419 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 MPV17LQ2QL34 196 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 PYY3Q5JQD4 70 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 BRICD5Q6PL45 260 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 Q6ZPA2 131 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF611Q8N823 705 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 IMMP1LQ96LU5 166 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 RAB40CQ96S21 281 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 ABHD14AQ9BUJ0 271 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 BCL2L14Q9BZR8 327 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 WNT5BQ9H1J7 359 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 PROK2Q9HC23 129 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 SPAG17Q6Q759 2223 aa14.01□□□□□ -0.17
SHMT2-232ENST00000557487 CACNA1HO95180 2353 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 MED19A0JLT2 244 aaPredicted RBP14□□□□□ -0.17
SHMT2-232ENST00000557487 LRP5LA4QPB2 252 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 IFITM10A6NMD0 228 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 H0YL77 283 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 OMGP23515 440 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF92Q03936 586 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 CXorf66Q5JRM2 361 aaPredicted RBP14□□□□□ -0.17
SHMT2-232ENST00000557487 AAED1Q7RTV5 226 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 C1orf87Q8N0U7 546 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 PIGCQ92535 297 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 PFDN5Q99471 154 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 FOXB1Q99853 325 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 C1QTNF5Q9BXJ0 243 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 SRXN1Q9BYN0 137 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 CISD1Q9NZ45 108 aaKnown RBP14□□□□□ -0.17
SHMT2-232ENST00000557487 ASXL3Q9C0F0 2248 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 A0A1B0GU03 582 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF727A8MUV8 499 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 PTBP3O95758 552 aaKnown RBP14□□□□□ -0.17
SHMT2-232ENST00000557487 FGF5P12034 268 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 SRD5A2P31213 254 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 FGF12P61328 243 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 PLPPR1Q8TBJ4 325 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 CCDC74BQ96LY2 380 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 P2RX4Q99571 388 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 GFOD1Q9NXC2 390 aa14□□□□□ -0.17
SHMT2-232ENST00000557487 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 SLC22A20A6NK97 555 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 CHST1O43916 411 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BKO60814 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BJP06899 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 CXCL1P09341 107 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H1BP16401 226 aaKnown RBP13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BOP23527 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BBP33778 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BDP58876 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BCP62807 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST2H2BEQ16778 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF818PQ6ZRF7 136 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 SLC25A26Q70HW3 274 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 LINC00596Q86U02 117 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 ODF3L1Q8IXM7 274 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 GAPTQ8N292 157 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BHQ93079 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BNQ99877 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 HIST1H2BMQ99879 126 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 PSMG3Q9BT73 122 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-232ENST00000557487 RNF115Q9Y4L5 304 aa13.99□□□□□ -0.17
SHMT2-232ENST00000557487 A0A1W2PQM1 296 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF716A6NP11 495 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CLDN34H7C241 214 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CST7O76096 145 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 B4GALT1P15291 398 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 NOVA1P51513 510 aaKnown RBP13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CARD18P57730 90 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 ERVFRD-1P60508 538 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CCL7P80098 99 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 DEFA6Q01524 100 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 IL11RAQ14626 422 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 DAZAP2Q15038 168 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-232ENST00000557487 RSPO4Q2I0M5 234 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-232ENST00000557487 ABLIM2Q6H8Q1 611 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 ZNF600Q6ZNG1 722 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 OR2V1Q8NHB1 315 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 MBD3L1Q8WWY6 194 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 LOXL4Q96JB6 756 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 SGCZQ96LD1 299 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 CTDSP1Q9GZU7 261 aa13.98□□□□□ -0.17
SHMT2-232ENST00000557487 MAGT1Q9H0U3 335 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms