RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RNF126Q9BV68 326 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 SLC26A1Q9H2B4 701 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 CEBPZOSA8MTT3 80 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 SLC35G3Q8N808 338 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 OR10V1Q8NGI7 309 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 IMMP1LQ96LU5 166 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 SLC2A8Q9NY64 477 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 PRSS50Q9UI38 385 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 KIAA1549LQ6ZVL6 1849 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 C3orf85A0A1B0GTC6 90 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 H2AFB1P0C5Y9 115 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 SULT1A1P50225 295 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 RUNX1Q01196 453 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 DCAF10Q5QP82 559 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 FAM166AQ6J272 317 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 TBC1D26Q86UD7 250 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 OR2M7Q8NG81 312 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 OR52M1Q8NGK5 317 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 HIST1H2BAQ96A08 127 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 MED13Q9UHV7 2174 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 PINLYPA6NC86 204 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 RAB11AP62491 216 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 ADAMTS17Q8TE56 1095 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 TMPRSS5Q9H3S3 457 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 TRGV5A0A0B4J1U4 118 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 TERTO14746 1132 aaKnown RBP12.85□□□□□ -0.35
CUX1-215ENST00000556210 IL2RAP01589 272 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 OR10D4PQ8NGN7 298 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 OR1K1Q8NGR3 316 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 APOBEC3DQ96AK3 386 aaPredicted RBP12.85□□□□□ -0.35
CUX1-215ENST00000556210 SLC35B3Q9H1N7 401 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 GAR1Q9NY12 217 aaKnown RBP12.85□□□□□ -0.35
CUX1-215ENST00000556210 TINAGQ9UJW2 476 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 FOSL1P15407 271 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 SULT1A2P50226 295 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 OR8G1Q15617 311 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 DEFB109BQ30KR1 87 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 TMEM251Q8N6I4 163 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 SLC25A31Q9H0C2 315 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 WNT5BQ9H1J7 359 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 KIR2DS1A0A191URI9 304 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 ZNF705GA8MUZ8 300 aaPredicted RBP12.85□□□□□ -0.35
CUX1-215ENST00000556210 YIF1AO95070 293 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 MELTFP08582 738 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 METTL15P1P0C7V9 234 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 KIR2DS4P43632 304 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 TRA2AQ13595 282 aaKnown RBP eCLIP12.85□□□□□ -0.35
CUX1-215ENST00000556210 KIR2DS1Q14954 304 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 TBC1D28Q2M2D7 210 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 CXorf66Q5JRM2 361 aaPredicted RBP12.85□□□□□ -0.35
CUX1-215ENST00000556210 DEFB124Q8NES8 71 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 ERGIC1Q969X5 290 aa12.85□□□□□ -0.35
CUX1-215ENST00000556210 RTBDNQ9BSG5 229 aaPredicted RBP12.85□□□□□ -0.35
CUX1-215ENST00000556210 SPAARA0A1B0GVQ0 90 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 TSTD3H0UI37 97 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 CD63P08962 238 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 CEBPDP49716 269 aaPredicted RBP12.84□□□□□ -0.35
CUX1-215ENST00000556210 BARX1Q9HBU1 254 aaPredicted RBP12.84□□□□□ -0.35
CUX1-215ENST00000556210 PARP11Q9NR21 331 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 GSN-AS1Q9NRJ2 163 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 A0A0U1RQV5 110 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 FGF16O43320 207 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 FAM3AP98173 230 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 ZNF266Q14584 549 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 ZNF239Q16600 458 aaKnown RBP12.84□□□□□ -0.35
CUX1-215ENST00000556210 ZNF528Q3MIS6 628 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 VAX1Q5SQQ9 334 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 HIST2H3PS2Q5TEC6 136 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 LFNGQ8NES3 379 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 MSL2Q9HCI7 577 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 DOCK11Q5JSL3 2073 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 LNP1A1A4G5 178 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 CYB5BO43169 146 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 CST2P09228 141 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 TMEM230Q96A57 120 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 AQP10Q96PS8 301 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 TTTY12Q9BZ98 90 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 COA4Q9NYJ1 87 aa12.84□□□□□ -0.35
CUX1-215ENST00000556210 CTSDP07339 412 aaPredicted RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 FGF8P55075 233 aaPredicted RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 SOX8P57073 446 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 RBMXL1Q96E39 390 aaKnown RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 SH3BGRL3Q9H299 93 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 KLF13Q9Y2Y9 288 aaPredicted RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 FRYLO94915 3013 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 NUP210Q8TEM1 1887 aaPredicted RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 WIPF3A6NGB9 483 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 MBPP02686 304 aaPredicted RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 PRF1P14222 555 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 ZNF154Q13106 437 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 FAM58AQ8N1B3 248 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 OR2J1Q9GZK6 312 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 SPTBN5Q9NRC6 3674 aaKnown RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 CHST1O43916 411 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 ZNF766Q5HY98 468 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 ZNF573Q86YE8 665 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 OR2C3Q8N628 320 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 ZIC4Q8N9L1 334 aa12.83□□□□□ -0.36
CUX1-215ENST00000556210 CPEB3Q8NE35 698 aaKnown RBP12.83□□□□□ -0.36
CUX1-215ENST00000556210 ZNF552Q9H707 407 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms