RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 DLX1P56177 255 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 DLX6P56179 175 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 SRSF2Q01130 221 aaKnown RBP11.66□□□□□ -0.54
SHMT2-217ENST00000555116 CD300CQ08708 224 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 NHLRC3Q5JS37 347 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 RUSC1-AS1Q66K80 236 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 BRD3OSQ6XYD6 125 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 TCF23Q7RTU1 214 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 C11orf42Q8N5U0 333 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 CHST4Q8NCG5 386 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 PPP1R35Q8TAP8 253 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 NEDD4LQ96PU5 975 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 UQCC2Q9BRT2 126 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 MS4A7Q9GZW8 240 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-217ENST00000555116 UNKLQ9H9P5 680 aaKnown RBP11.66□□□□□ -0.54
SHMT2-217ENST00000555116 A0A1W2PP11 408 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 PLA2G10O15496 165 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 VENTXO95231 258 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 CCL3L1P16619 93 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 SERPINA2P20848 420 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 PRTN3P24158 256 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 EDDM3BP56851 147 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 BPIFB3P59826 476 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 PRB3Q04118 309 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-217ENST00000555116 EDDM3AQ14507 147 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 SLC22A6Q4U2R8 563 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 GLIPR1L1Q6UWM5 242 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 OSR2Q8N2R0 312 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 ZNF418Q8TF45 676 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-217ENST00000555116 ZNF48Q96MX3 618 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-217ENST00000555116 S100A13Q99584 98 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 C11orf54Q9H0W9 315 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-217ENST00000555116 PPA2Q9H2U2 334 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 ABRACLQ9P1F3 81 aa11.65□□□□□ -0.54
SHMT2-217ENST00000555116 AK6Q9Y3D8 172 aaKnown RBP11.65□□□□□ -0.54
SHMT2-217ENST00000555116 A0A0A6YYJ9 748 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 TRAV24A0A0B4J272 114 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 IGHV1-69DA0A0B4J2H0 117 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 RNASEK-C17orf49H0YIS7 233 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 ZNF780AO75290 641 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-217ENST00000555116 IGHV1-69P01742 117 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 CSTBP04080 98 aaKnown RBP11.64□□□□□ -0.55
SHMT2-217ENST00000555116 ERP29P30040 261 aaKnown RBP11.64□□□□□ -0.55
SHMT2-217ENST00000555116 TALDO1P37837 337 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 RBM11P57052 281 aaKnown RBP11.64□□□□□ -0.55
SHMT2-217ENST00000555116 MEF2CQ06413 473 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-217ENST00000555116 C1orf100Q5SVJ3 147 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 TRIQKQ629K1 86 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 AWAT2Q6E213 333 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 TPRX1Q8N7U7 411 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 OR5H6Q8NGV6 325 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 GFI1Q99684 422 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 SUCNR1Q9BXA5 334 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 METTL8Q9H825 291 aaKnown RBP11.64□□□□□ -0.55
SHMT2-217ENST00000555116 ZNF581Q9P0T4 197 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 ST3GAL6Q9Y274 331 aa11.64□□□□□ -0.55
SHMT2-217ENST00000555116 A0A0B4J203 849 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 PDCD5O14737 125 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 CSN2P05814 226 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 SNRPBP14678 240 aaKnown RBP11.63□□□□□ -0.55
SHMT2-217ENST00000555116 P2RX3P56373 397 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 HILS1P60008 231 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 KLRD1Q13241 179 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 GPR176Q14439 515 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 HCP5Q6MZN7 132 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 PDZD9Q8IXQ8 264 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 SIGLECL1Q8N7X8 197 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 FOXRED1Q96CU9 486 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-217ENST00000555116 COQ2Q96H96 371 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 SLITRK2Q9H156 845 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 IFT22Q9H7X7 185 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 PCDHB16Q9NRJ7 776 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 COL6A5A8TX70 2615 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 A0A1W2PPH5 198 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 MEX3AA1L020 520 aaKnown RBP11.63□□□□□ -0.55
SHMT2-217ENST00000555116 C17orf98A8MV24 154 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 GTF2F2P13984 249 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 GLT8D1Q68CQ7 371 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 LINC00312Q9Y6C7 94 aa11.63□□□□□ -0.55
SHMT2-217ENST00000555116 FBN1P35555 2871 aaKnown RBP11.62□□□□□ -0.55
SHMT2-217ENST00000555116 hADV38S2A0JD32 116 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 GEMIN2O14893 280 aaKnown RBP11.62□□□□□ -0.55
SHMT2-217ENST00000555116 ZNF728P0DKX0 622 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 ERVFRD-1P60508 538 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 AESQ08117 197 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 PAN3Q58A45 887 aaKnown RBP11.62□□□□□ -0.55
SHMT2-217ENST00000555116 NCR3LG1Q68D85 454 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 LINC00596Q86U02 117 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 PIP4P2Q8N4L2 257 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 DTX3Q8N9I9 347 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 TMEM104Q8NE00 496 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 CHAC2Q8WUX2 184 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 MRPS24Q96EL2 167 aaKnown RBP11.62□□□□□ -0.55
SHMT2-217ENST00000555116 MDFIQ99750 246 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 PRDM13Q9H4Q3 707 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 ESM1Q9NQ30 184 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 SPATA2Q9UM82 520 aa11.62□□□□□ -0.55
SHMT2-217ENST00000555116 MDFIC2A0A1B0GVS7 189 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 IFITM5A6NNB3 132 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 AIPO00170 330 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms