RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 MYDGFQ969H8 173 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 PHF21AQ96BD5 680 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 RDH12Q96NR8 316 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 ZNF649Q9BS31 505 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 METTL9Q9H1A3 318 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 FGF20Q9NP95 211 aaPredicted RBP10.17□□□□□ -0.78
LINC00643-202ENST00000553426 TMEM138Q9NPI0 162 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 CHCHD3Q9NX63 227 aaKnown RBP10.17□□□□□ -0.78
LINC00643-202ENST00000553426 TAS2R4Q9NYW5 299 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 ING4Q9UNL4 249 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 ST3GAL6Q9Y274 331 aa10.17□□□□□ -0.78
LINC00643-202ENST00000553426 ZNF780AO75290 641 aaPredicted RBP10.16□□□□□ -0.78
LINC00643-202ENST00000553426 OR7C1O76099 320 aaPredicted RBP10.16□□□□□ -0.78
LINC00643-202ENST00000553426 BAG2O95816 211 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 LIMS3P0CW19 117 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 LIMS4P0CW20 117 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 CGB3P0DN86 165 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 CGB7P0DN87 165 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 TMEM11P17152 192 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 GZMHP20718 246 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 PAX5Q02548 391 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 LTC4SQ16873 150 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 PIGYQ3MUY2 71 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 DDI2Q5TDH0 399 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 ASCL4Q6XD76 172 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 Q6ZPA2 131 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 LINC00596Q86U02 117 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 OR8H3Q8N146 312 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 OSR2Q8N2R0 312 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 Q8NFD4 153 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 OR56B4Q8NH76 319 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 RFESDQ8TAC1 157 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 NEK7Q8TDX7 302 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 DPCDQ9BVM2 203 aaPredicted RBP10.16□□□□□ -0.78
LINC00643-202ENST00000553426 LINC00574Q9H8X3 128 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 SMPD3Q9NY59 655 aaPredicted RBP10.16□□□□□ -0.78
LINC00643-202ENST00000553426 CKLFQ9UBR5 152 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 PSG11Q9UQ72 335 aa10.16□□□□□ -0.78
LINC00643-202ENST00000553426 TMEM30CPA0ZSE6 113 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 PSMB11A5LHX3 300 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 NPIPB11E5RHQ5 1161 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 EBAG9O00559 213 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 CDRT1O95170 752 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 DUS4LO95620 317 aaKnown RBP10.15□□□□□ -0.78
LINC00643-202ENST00000553426 IGHV3-7P01780 117 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 SNRNP70P08621 437 aaKnown RBP10.15□□□□□ -0.78
LINC00643-202ENST00000553426 IGLL1P15814 213 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 BDKRB2P30411 391 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 GNG10P50151 68 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 RIPK1Q13546 671 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 ATAD3CQ5T2N8 411 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 RSBN1Q5VWQ0 802 aaPredicted RBP10.15□□□□□ -0.78
LINC00643-202ENST00000553426 DRAM1Q8N682 238 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 SUMF2Q8NBJ7 301 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 OR51D1Q8NGF3 324 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 OR52N1Q8NH53 320 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 CHPT1Q8WUD6 406 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 APH1BQ8WW43 257 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 RCC1LQ96I51 464 aaKnown RBP10.15□□□□□ -0.78
LINC00643-202ENST00000553426 IFT22Q9H7X7 185 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 RAB9BQ9NP90 201 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 AURKAIP1Q9NWT8 199 aaPredicted RBP10.15□□□□□ -0.78
LINC00643-202ENST00000553426 BABAM2Q9NXR7 383 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 IL36GQ9NZH8 169 aa10.15□□□□□ -0.78
LINC00643-202ENST00000553426 EXOSC1Q9Y3B2 195 aaKnown RBP10.15□□□□□ -0.78
LINC00643-202ENST00000553426 FAM90A18PA6NE21 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A16PA6NEW6 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A20PA6NIJ5 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 SH2D7A6NKC9 451 aaPredicted RBP10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A9PA6NNJ1 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A12PA8MX19 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A5PA8MXJ8 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FGF16O43320 207 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 AMY1AP04745 511 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 AMY2AP04746 511 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A15PP0C7V4 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A13PP0C7W8 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A14PP0C7W9 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FAM90A24PP0C7X0 464 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 GTF2F2P13984 249 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 SERPINA2P20848 420 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 IL3RAP26951 378 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 SSTR5P35346 364 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 ETV1P50549 477 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 RBM11P57052 281 aaKnown RBP10.14□□□□□ -0.79
LINC00643-202ENST00000553426 SLC35B1P78383 322 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 GPR176Q14439 515 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 HNF4GQ14541 408 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 MPV17LQ2QL34 196 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 TCTEX1D4Q5JR98 221 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 NHLRC3Q5JS37 347 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 FOXB2Q5VYV0 432 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 STX19Q8N4C7 294 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 SETD9Q8NE22 299 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 PLPPR1Q8TBJ4 325 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 RGP1Q92546 391 aaPredicted RBP10.14□□□□□ -0.79
LINC00643-202ENST00000553426 LEAP2Q969E1 77 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 SMIM19Q96E16 107 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 GPR61Q9BZJ8 451 aa10.14□□□□□ -0.79
LINC00643-202ENST00000553426 NBEAL2Q6ZNJ1 2754 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms