RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DEDDO75618 318 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SCGNO76038 276 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 OPN1LWP04000 364 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 METTL15P1P0C7V9 234 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 LINC00614P0C842 121 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 OR5H8P0DN80 308 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SERPINA2P20848 420 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 LMO1P25800 156 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 APLNRP35414 380 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 GLIPR1P48060 266 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF41P51814 821 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 EGR4Q05215 589 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 COTL1Q14019 142 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SLC17A1Q14916 467 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 MEP1BQ16820 701 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 IAH1Q2TAA2 248 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 C1orf100Q5SVJ3 147 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 THEM4Q5T1C6 240 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 RAET1LQ5VY80 246 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 GRINAQ7Z429 371 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM183AQ8IXX5 376 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 C1orf87Q8N0U7 546 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 OR51A2Q8NGJ7 313 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 DTD1Q8TEA8 209 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 TAAR8Q969N4 342 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 TVP23CQ96ET8 276 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SNX22Q96L94 193 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 OR8B4Q96RC9 309 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 AMELYQ99218 206 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 RARRES2Q99969 163 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 GINS3Q9BRX5 216 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 WNT5BQ9H1J7 359 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 PLEKHA2Q9HB19 425 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 MRPS18CQ9Y3D5 142 aaKnown RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 POLQO75417 2590 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 MAP1AP78559 2803 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 MPDZO75970 2070 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 A0A0G2JNJ9 132 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 RBFOX3A6NFN3 312 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 H7C1C5 153 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 WDR1O75083 606 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 GCGP01275 180 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 GNB3P16520 340 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 PI3P19957 117 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 IL11P20809 199 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 GABRR1P24046 479 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 PPP1CCP36873 323 aaKnown RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 CEBPGP53567 150 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 SUMO3P55854 103 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 CLDN18P56856 261 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 CTXN1P60606 82 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 LCN6P62502 163 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ACSF3Q4G176 576 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 VAX1Q5SQQ9 334 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 C1orf185Q5T7R7 199 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF429Q86V71 674 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF808Q8N4W9 903 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 NKAIN3Q8N8D7 197 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 OR4D6Q8NGJ1 314 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 OTOSQ8NHW6 89 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 FAM213BQ8TBF2 198 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ST8SIA1Q92185 356 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 RND1Q92730 232 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ERGIC1Q969X5 290 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 PPP1R14AQ96A00 147 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 RCC1LQ96I51 464 aaKnown RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 Q9UFV3 132 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 A8MVM7 634 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 AHRRA9YTQ3 701 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 H0YL77 283 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 H3BML4 177 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 C19orf84I3L1E1 186 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 HSD17B6O14756 317 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 EFNA2O43921 213 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 IL18BPO95998 194 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 RENP00797 406 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 AMBPP02760 352 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 OR5AC1P0C628 307 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 KLK2P20151 261 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 APOBEC1P41238 236 aaKnown RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 P2RY1P47900 373 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 H3F3AP84243 136 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 FOXF1Q12946 379 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF74Q16587 644 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ALG10Q5BKT4 473 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 SLC35D2Q76EJ3 337 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 OR13C3Q8NGS6 347 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 POC1BQ8TC44 478 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 ADGRG7Q96K78 797 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 TRIB1Q96RU8 372 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 NIPSNAP3BQ9BS92 247 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 RTBDNQ9BSG5 229 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 GRHPRQ9UBQ7 328 aa6.61□□□□□ -1.35
LIMA1-216ENST00000552909 LSM5Q9Y4Y9 91 aaKnown RBP6.61□□□□□ -1.35
LIMA1-216ENST00000552909 HRNRQ86YZ3 2850 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-216ENST00000552909 TRAV36DV7A0A075B6V5 113 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 NKX2-6A6NCS4 301 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 FTCDNL1E5RQL4 147 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 M0QZK8 103 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms