RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PRRX2Q99811 253 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 REPIN1Q9BWE0 567 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 NAA60Q9H7X0 242 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 GHRLQ9UBU3 117 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 MFSD2BA6NFX1 497 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 KIAA1324LA8MWY0 1029 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 ACTL6AO96019 429 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR13C7P0DN81 318 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR3A1P47881 315 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CAMLGP49069 296 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 MECP2P51608 486 aaKnown RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 PRB3Q04118 309 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM267Q0VDI3 215 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TBC1D28Q2M2D7 210 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 RIPPLY2Q5TAB7 128 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 PRSS54Q6PEW0 395 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 FAM213BQ8TBF2 198 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CD300LFQ8TDQ1 290 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 LEAP2Q969E1 77 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 MARC2Q969Z3 335 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CNTNAP3BQ96NU0 1288 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CNTNAP3Q9BZ76 1288 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 SLC2A8Q9NY64 477 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 RASL12Q9NYN1 266 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 C3orf85A0A1B0GTC6 90 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR6C65A6NJZ3 312 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 M0R036 132 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 ABCD4O14678 606 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TXNL1O43396 289 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 KRASP01116 189 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CD8AP01732 235 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 SERPINE2P07093 398 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CTSDP07339 412 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 RPS2P15880 293 aaKnown RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 ARR3P36575 388 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 EDDM3BP56851 147 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TGFBR3Q03167 851 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 FOXC1Q12948 553 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 PSG7Q13046 419 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 GNMTQ14749 295 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 SMUG1Q53HV7 270 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 DBX2Q6ZNG2 339 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 LRP11Q86VZ4 500 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 LHFPL1Q86WI0 220 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 POC1AQ8NBT0 407 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR2Z1Q8NG97 314 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 SSC4DQ8WTU2 575 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 NTNG2Q96CW9 530 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TM2D1Q9BX74 207 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 C1QTNF5Q9BXJ0 243 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 RAB18Q9NP72 206 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 METRNQ9UJH8 293 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 IGLV3-1P01715 115 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 SNRNP70P08621 437 aaKnown RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 HKR1P10072 659 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 PSG2P11465 335 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TBPP20226 339 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CEACAM6P40199 344 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 EIF2S3P41091 472 aaKnown RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 LPAR6P43657 344 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 GNG3P63215 75 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 EIF3IQ13347 325 aaKnown RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR8B8Q15620 311 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CLPPQ16740 277 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-215ENST00000552823 CEACAM21Q3KPI0 293 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 SHEQ5VZ18 495 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 LPCAT3Q6P1A2 487 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 LGI3Q8N145 548 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 SCCPDHQ8NBX0 429 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 MDS2Q8NDY4 140 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR52L2PQ8NGH6 319 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR1L1Q8NH94 360 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 OR10J5Q8NHC4 309 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 PLPPR1Q8TBJ4 325 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 C2CD4CQ8TF44 421 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TAAR6Q96RI8 345 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 HINT2Q9BX68 163 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 DLL3Q9NYJ7 618 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 KIF25Q9UIL4 384 aa4.77□□□□□ -1.65
LIMA1-215ENST00000552823 TACC2O95359 2948 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CENPEQ02224 2701 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 IGKV1-6A0A0C4DH72 117 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 A0A1B0GW55 424 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 MPPED1O15442 326 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DNPH1O43598 174 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF883P0CG24 379 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4L2P0CJ85 424 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4L3P0CJ86 424 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4L4P0CJ87 422 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4L5P0CJ88 424 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4L6P0CJ89 424 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4L7P0CJ90 424 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CD37P11049 281 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 SELLP14151 372 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 IL2RGP31785 369 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 NKX2-1P43699 371 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ERVFRD-1P60508 538 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF154Q13106 437 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM187Q14656 261 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 HERPUD1Q15011 391 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms