RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 A0A1B0GTI1 187 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 CHST1O43916 411 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 ZNF787Q6DD87 383 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 Q8IYB0 196 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 OR10X1Q8NGY0 326 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 IGHV3OR15-7A0A075B7D8 119 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 FAM90A27PA6NNH2 459 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 C17orf112F2Z3M2 114 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 J3QT63 122 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 F12P00748 615 aaPredicted RBP12.99□□□□□ -0.33
CUX1-214ENST00000550008 SFTA3P0C7M3 94 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 UBE2G2P60604 165 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 FAM3AP98173 230 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 PJVKQ0ZLH3 352 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 BATFQ16520 125 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 GUK1Q16774 197 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 ANKRD55Q3KP44 614 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 OR5A2Q8NGI9 324 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 SOSTQ9BQB4 213 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 C19orf12Q9NSK7 152 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 DEPPQ9NTK1 212 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.98□□□□□ -0.333e-7■■■■■ 26.8
CUX1-214ENST00000550008 TRDCB7Z8K6 153 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 TUSC1Q2TAM9 212 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 OR1K1Q8NGR3 316 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 EDARADDQ8WWZ3 215 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 OR10C1Q96KK4 312 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 DDA1Q9BW61 102 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 OPN3Q9H1Y3 402 aaPredicted RBP12.98□□□□□ -0.33
CUX1-214ENST00000550008 C5orf66Q9H5L9 145 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 TICRRQ7Z2Z1 1910 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 ZNF705GA8MUZ8 300 aaPredicted RBP12.98□□□□□ -0.33
CUX1-214ENST00000550008 NMBP08949 121 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 PRF1P14222 555 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 MOGAT3Q86VF5 341 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 FDCSPQ8NFU4 85 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 OR10S1Q8NGN2 331 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 MRPL13Q9BYD1 178 aaKnown RBP12.98□□□□□ -0.33
CUX1-214ENST00000550008 MED9Q9NWA0 146 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 TRIM77I1YAP6 450 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 IZUMO4Q1ZYL8 232 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 WNT2BQ93097 391 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 MSI2Q96DH6 328 aaKnown RBP12.98□□□□□ -0.33
CUX1-214ENST00000550008 MALSU1Q96EH3 234 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 TNFSF18Q9UNG2 199 aa12.98□□□□□ -0.33
CUX1-214ENST00000550008 ZNF727A8MUV8 499 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 C1QL1O75973 258 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 PMELP40967 661 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 PSMB3P49720 205 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 KLF3P57682 345 aaPredicted RBP12.97□□□□□ -0.33
CUX1-214ENST00000550008 TUBAL3A6NHL2 446 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 C9orf172C9J069 976 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 CYC1P08574 325 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 ZP3P21754 424 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 P2RY4P51582 365 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 GNB1P62873 340 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 NHLH2Q02577 135 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 ZNF154Q13106 437 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 ZNF660Q6AZW8 331 aaPredicted RBP12.97□□□□□ -0.33
CUX1-214ENST00000550008 ZNF107Q9UII5 783 aaPredicted RBP12.97□□□□□ -0.33
CUX1-214ENST00000550008 GAB2Q9UQC2 676 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 A0A1W2PPE3 182 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 OR5H1A6NKK0 313 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 HAND1O96004 215 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 DAOP14920 347 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 FGF8P55075 233 aaPredicted RBP12.97□□□□□ -0.33
CUX1-214ENST00000550008 SSTP61278 116 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 C4orf17Q53FE4 359 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 LAMTOR1Q6IAA8 161 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 LFNGQ8NES3 379 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 OR4F5Q8NH21 305 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 OR4F4Q96R69 305 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 TANC1Q9C0D5 1861 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 OR2C1O95371 312 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 NDUFA6P56556 154 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 TMEM50BP56557 158 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 SURF2Q15527 256 aaPredicted RBP12.97□□□□□ -0.33
CUX1-214ENST00000550008 VAX1Q5SQQ9 334 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 NMES1Q9C002 83 aa12.97□□□□□ -0.33
CUX1-214ENST00000550008 DTYMKP23919 212 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 RAB5CP51148 216 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 TNFAIP6P98066 277 aaPredicted RBP12.96□□□□□ -0.33
CUX1-214ENST00000550008 FOXO1Q12778 655 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 FAM214BQ7L5A3 538 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 CLRN3Q8NCR9 226 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 GUCD1Q96NT3 240 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 MMP24Q9Y5R2 645 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 TRGV10A0A0A0MS01 117 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 C5orf63A6NC05 138 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 NPIPB13A6NJU9 1138 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 NPIPB4C9JG80 1138 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 APOA2P02652 100 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 RIPPLY2Q5TAB7 128 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 BHLHA15Q7RTS1 189 aaPredicted RBP12.96□□□□□ -0.33
CUX1-214ENST00000550008 RNF144BQ7Z419 303 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 TIMP4Q99727 224 aa12.96□□□□□ -0.33
CUX1-214ENST00000550008 ZNF552Q9H707 407 aaPredicted RBP12.96□□□□□ -0.33
CUX1-214ENST00000550008 ABCD4O14678 606 aa12.96□□□□□ -0.34
CUX1-214ENST00000550008 EIF3GO75821 320 aaKnown RBP eCLIP12.96□□□□□ -0.34
CUX1-214ENST00000550008 TMEM211Q6ICI0 200 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms