RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	GPER1	Q99527	375 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	PCDHB16	Q9NRJ7	776 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM118A	Q9NWS6	357 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	IDI2-AS1	Q9NZ38	188 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	WBP4	O75554	376 aa	Known RBP	13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	PF4	P02776	101 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SNRNP70	P08621	437 aa	Known RBP	13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	DIAPH2-AS1	Q14236	149 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	RSU1	Q15404	277 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SMN1	Q16637	294 aa	Known RBP	13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SATL1	Q86VE3	508 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OSR2	Q8N2R0	312 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	PQLC1	Q8N2U9	271 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	ZNF565	Q8N9K5	539 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	GPR148	Q8TDV2	347 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	BARHL1	Q9BZE3	327 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FGF20	Q9NP95	211 aa	Predicted RBP	13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	PSG11	Q9UQ72	335 aa		13.81	□□□□□ -0.2
CHMP1A-205	ENST00000548650	MAGEB3	O15480	346 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	CDRT1	O95170	752 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM106CP	P0CH98	169 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	C21orf33	P30042	268 aa	Predicted RBP	13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	KCNJ3	P48549	501 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	RBM11	P57052	281 aa	Known RBP	13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SLC35A2	P78381	396 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	MADCAM1	Q13477	382 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	CCDC58	Q4VC31	144 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	KLHL22	Q53GT1	634 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	NHLRC3	Q5JS37	347 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	KHDC1L	Q5JSQ8	128 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	C9orf152	Q5JTZ5	239 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	THNSL2	Q86YJ6	484 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	DRAM1	Q8N682	238 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	TMEM106A	Q96A25	262 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	DPCD	Q9BVM2	203 aa	Predicted RBP	13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	IFT22	Q9H7X7	185 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	S100A14	Q9HCY8	104 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	IL36G	Q9NZH8	169 aa		13.8	□□□□□ -0.2
CHMP1A-205	ENST00000548650	TRAV39	A0A0B4J263	110 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	HTR3B	O95264	441 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	CD2	P06729	351 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	GNG10	P50151	68 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	ETV1	P50549	477 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	LTC4S	Q16873	150 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OR2G6	Q5TZ20	316 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	RPL22L1	Q6P5R6	122 aa	Known RBP	13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	C5orf56	Q8N8D9	126 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SUMF2	Q8NBJ7	301 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OR10A7	Q8NGE5	316 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	RFESD	Q8TAC1	157 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	ST3GAL6	Q9Y274	331 aa		13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SIRT4	Q9Y6E7	314 aa	Predicted RBP	13.79	□□□□□ -0.2
CHMP1A-205	ENST00000548650	PSMB11	A5LHX3	300 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	TMEM11	P17152	192 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	DDI2	Q5TDH0	399 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	ETV3L	Q6ZN32	361 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OR8H3	Q8N146	312 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OR13C5	Q8NGS8	318 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	ORAI1	Q96D31	301 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	RCC1L	Q96I51	464 aa	Known RBP	13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	TMEM138	Q9NPI0	162 aa		13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SMPD3	Q9NY59	655 aa	Predicted RBP	13.78	□□□□□ -0.2
CHMP1A-205	ENST00000548650		A0A1W2PPE3	182 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	MAGEA13P	A6NCF6	341 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	HSD17B6	O14756	317 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	OR7C1	O76099	320 aa	Predicted RBP	13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	LALBA	P00709	142 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGKV1D-33	P01593	117 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGKV1-33	P01594	117 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	DCK	P27707	260 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF93	P35789	620 aa	Predicted RBP	13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	RAB7A	P51149	207 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	PPP3R1	P63098	170 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	SLC16A12	Q6ZSM3	486 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	C10orf67	Q8IYJ2	551 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	LINC00482	Q8N8I6	264 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	SMIM19	Q96E16	107 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	RDH12	Q96NR8	316 aa		13.77	□□□□□ -0.21
CHMP1A-205	ENST00000548650	TMEM30CP	A0ZSE6	113 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650		K7EIL1	84 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	GEMIN2	O14893	280 aa	Known RBP	13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	FGF16	O43320	207 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	MPIG6B	O95866	241 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	SERPINA2	P20848	420 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	BDKRB2	P30411	391 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF816	Q0VGE8	651 aa	Predicted RBP	13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	HES1	Q14469	280 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	LINC00596	Q86U02	117 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF329	Q86UD4	541 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	OR10X1	Q8NGY0	326 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	OR52N1	Q8NH53	320 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	NOL4L	Q96MY1	436 aa	Predicted RBP	13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	METTL9	Q9H1A3	318 aa		13.76	□□□□□ -0.21
CHMP1A-205	ENST00000548650	TRBV5-5	A0A0J9YX44	114 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650		A0A1W2PP11	408 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	C15orf65	H3BRN8	121 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	OGG1	O15527	345 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	DUS4L	O95620	317 aa	Known RBP	13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	CLIC3	O95833	236 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGFBP3	P17936	291 aa	Predicted RBP	13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms