RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 H0YJX3 145 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 HSPB6O14558 160 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 SAP30O75446 220 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 JTBO76095 146 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 MOSP00540 346 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 IGKV1D-12P01611 117 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 MT-ND2P03891 347 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 TMEM225BP0DP42 221 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 PSMB8P28062 276 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 KCNJ3P48549 501 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 UTF1Q5T230 341 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 SSX6Q7RTT6 188 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 AQP12AQ8IXF9 295 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 OR5D18Q8NGL1 313 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 OR6Q1Q8NGQ2 317 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 OR13A1Q8NGR1 328 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 RFESDQ8TAC1 157 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 CANT1Q8WVQ1 401 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 NRBF2Q96F24 287 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 S1PR3Q99500 378 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 GNG8Q9UK08 70 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 VSIG4Q9Y279 399 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 DNAH7Q8WXX0 4024 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 EPPK1P58107 5090 aaKnown RBP13.19□□□□□ -0.3
VPS29-204ENST00000548259 IGHV3-72A0A0B4J1Y9 119 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 NPIPB11E5RHQ5 1161 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 OVOL1O14753 267 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 LDLRAD4O15165 306 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 APOL3O95236 402 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 HCKP08631 526 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 CD1BP29016 333 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 HTR1FP30939 366 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 REG1BP48304 166 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 MTNR1BP49286 362 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 ZP1P60852 638 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 ISL1P61371 349 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 RDH10Q8IZV5 341 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 PRSS35Q8N3Z0 413 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 MRGPRDQ8TDS7 321 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 CPNE2Q96FN4 548 aaPredicted RBP13.19□□□□□ -0.3
VPS29-204ENST00000548259 KCTD7Q96MP8 289 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 IL4I1Q96RQ9 567 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 ZNF580Q9UK33 172 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 KIAA2026Q5HYC2 2103 aa13.19□□□□□ -0.3
VPS29-204ENST00000548259 SACSQ9NZJ4 4579 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 TXNL1O43396 289 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 IGF1P05019 195 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 GP9P14770 177 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 RUNX1Q01196 453 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 CFHR3Q02985 330 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 GABPB1Q06547 395 aaPredicted RBP13.18□□□□□ -0.3
VPS29-204ENST00000548259 Q8N6K4 173 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 NSL1Q96IY1 281 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 ENOPH1Q9UHY7 261 aa13.18□□□□□ -0.3
VPS29-204ENST00000548259 ISG15P05161 165 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 GZMHP20718 246 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 CDK5R1Q15078 307 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 FAHD1Q6P587 224 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 OR13C3Q8NGS6 347 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 OR13C9Q8NGT0 318 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 OR2G2Q8NGZ5 317 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 CNIH3Q8TBE1 160 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 SPACA5Q96QH8 159 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 NR1H4Q96RI1 486 aaPredicted RBP13.17□□□□□ -0.3
VPS29-204ENST00000548259 MBOAT4Q96T53 435 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 OR51J1Q9H342 316 aa13.17□□□□□ -0.3
VPS29-204ENST00000548259 M0R129 80 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 RPSAP08865 295 aaKnown RBP13.16□□□□□ -0.3
VPS29-204ENST00000548259 SPNP16150 400 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 SSTR5P35346 364 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 KIR3DL2P43630 455 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 EFNB1P98172 346 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 PAX5Q02548 391 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 TMED1Q13445 227 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 KCTD20Q7Z5Y7 419 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 SPATA24Q86W54 205 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 LINC00311Q8N616 119 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 C8orf31Q8N9H6 132 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 RTN4IP1Q8WWV3 396 aaPredicted RBP13.16□□□□□ -0.3
VPS29-204ENST00000548259 RFKQ969G6 155 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 UTP4Q969X6 686 aaKnown RBP13.16□□□□□ -0.3
VPS29-204ENST00000548259 TM2D3Q9BRN9 247 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 ZNF107Q9UII5 783 aaPredicted RBP13.16□□□□□ -0.3
VPS29-204ENST00000548259 MYRFQ9Y2G1 1151 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 SORL1Q92673 2214 aa13.16□□□□□ -0.3
VPS29-204ENST00000548259 HUWE1Q7Z6Z7 4374 aaKnown RBP13.15□□□□□ -0.3
VPS29-204ENST00000548259 A0A1W2PPE3 182 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 I3L521 148 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 CALB2P22676 271 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 VEGFCP49767 419 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 IL13RA2Q14627 380 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 KISS1Q15726 138 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 TP53I3Q53FA7 332 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 RSBN1Q5VWQ0 802 aaPredicted RBP13.15□□□□□ -0.3
VPS29-204ENST00000548259 C12orf73Q69YU5 71 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 FAM71E2Q8N5Q1 922 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 ZNF491Q8N8L2 437 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 OR52M1Q8NGK5 317 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 OR5D14Q8NGL3 314 aa13.15□□□□□ -0.3
VPS29-204ENST00000548259 MYOZ3Q8TDC0 251 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms