RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SUCNR1Q9BXA5 334 aa12.9□□□□□ -0.35
USP28-214ENST00000545540 NUDT19A8MXV4 375 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 LINC00587B1AMM8 73 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 IAPPP10997 89 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 FKBP2P26885 142 aaKnown RBP12.89□□□□□ -0.35
USP28-214ENST00000545540 SOHLH1Q5JUK2 328 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 MRPL21Q7Z2W9 205 aaKnown RBP12.89□□□□□ -0.35
USP28-214ENST00000545540 RNASE11Q8TAA1 199 aaKnown RBP12.89□□□□□ -0.35
USP28-214ENST00000545540 SLC22A20A6NK97 555 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 YIF1AO95070 293 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 TK1P04183 234 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 MMP7P09237 267 aaPredicted RBP12.89□□□□□ -0.35
USP28-214ENST00000545540 FGF8P55075 233 aaPredicted RBP12.89□□□□□ -0.35
USP28-214ENST00000545540 HIKESHIQ53FT3 197 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 TMEM252Q8N6L7 170 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 OR4D5Q8NGN0 318 aa12.89□□□□□ -0.35
USP28-214ENST00000545540 GJE1A6NN92 205 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 HMGB3O15347 200 aaKnown RBP12.88□□□□□ -0.35
USP28-214ENST00000545540 SEC11BP0C7V7 166 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 MDKP21741 143 aaPredicted RBP12.88□□□□□ -0.35
USP28-214ENST00000545540 RPS10P46783 165 aaKnown RBP12.88□□□□□ -0.35
USP28-214ENST00000545540 TMEM42Q69YG0 159 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 RTL6Q6ICC9 239 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 SELENOHQ8IZQ5 122 aaKnown RBP12.88□□□□□ -0.35
USP28-214ENST00000545540 GINS3Q9BRX5 216 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 TMEM222Q9H0R3 208 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 PPP1R3CQ9UQK1 317 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 OR2B11Q5JQS5 317 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 OR2T2Q6IF00 324 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 SUMF2Q8NBJ7 301 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 CT55Q8WUE5 264 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 SGCZQ96LD1 299 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 ERRFI1Q9UJM3 462 aaPredicted RBP12.88□□□□□ -0.35
USP28-214ENST00000545540 TRDCB7Z8K6 153 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 RAB1AP62820 205 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 SLC25A24Q6NUK1 477 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 ODF3L1Q8IXM7 274 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 INTS12Q96CB8 462 aaKnown RBP12.88□□□□□ -0.35
USP28-214ENST00000545540 RSG1Q9BU20 258 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 OR1A1Q9P1Q5 309 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 RBM7Q9Y580 266 aaKnown RBP12.88□□□□□ -0.35
USP28-214ENST00000545540 POMT1Q9Y6A1 747 aa12.88□□□□□ -0.35
USP28-214ENST00000545540 RAB5AP20339 215 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 CA6P23280 308 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 ECI1P42126 302 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 RND3P61587 244 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.87□□□□□ -0.35
USP28-214ENST00000545540 SLC35B3Q9H1N7 401 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 CACNA1HO95180 2353 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 OR8B8Q15620 311 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 THNSL2Q86YJ6 484 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 CYB561D1Q8N8Q1 229 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 RBMXL1Q96E39 390 aaKnown RBP12.87□□□□□ -0.35
USP28-214ENST00000545540 ADGRG7Q96K78 797 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 SF3B5Q9BWJ5 86 aaKnown RBP12.87□□□□□ -0.35
USP28-214ENST00000545540 VSIRQ9H7M9 311 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 CHD3Q12873 2000 aaKnown RBP12.87□□□□□ -0.35
USP28-214ENST00000545540 HEXAP06865 529 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 PSG2P11465 335 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 Q6ZRM9 215 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 CCDC71LQ8N9Z2 235 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 CPNE4Q96A23 557 aaPredicted RBP12.87□□□□□ -0.35
USP28-214ENST00000545540 C10orf35Q96D05 121 aa12.87□□□□□ -0.35
USP28-214ENST00000545540 CA11O75493 328 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 OR2C1O95371 312 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 ZFP36L1Q07352 338 aaKnown RBP12.86□□□□□ -0.35
USP28-214ENST00000545540 LCN15Q6UWW0 184 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 LYPD6BQ8NI32 183 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 PSMF1Q92530 271 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 KIAA1549Q9HCM3 1950 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 TRAPPC2LH3BP13 241 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 RPL36A-HNRNPH2H7BZ11 118 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 K7N7A8 449 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 CXorf67Q86X51 503 aaPredicted RBP12.86□□□□□ -0.35
USP28-214ENST00000545540 RNF150Q9ULK6 438 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 TMED3Q9Y3Q3 217 aa12.86□□□□□ -0.35
USP28-214ENST00000545540 ZFP92A6NM28 416 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 SIRPB1O00241 398 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 CEBPDP49716 269 aaPredicted RBP12.85□□□□□ -0.35
USP28-214ENST00000545540 RPS23P62266 143 aaKnown RBP12.85□□□□□ -0.35
USP28-214ENST00000545540 FOXO1Q12778 655 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 IL13RA2Q14627 380 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 MPV17LQ2QL34 196 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 ATP1A1-AS1Q5TC04 95 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 GPR157Q5UAW9 335 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 ASCL4Q6XD76 172 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 NUFIP2Q7Z417 695 aaKnown RBP12.85□□□□□ -0.35
USP28-214ENST00000545540 C15orf54Q8N8G6 183 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 Q9N2K0 584 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 PRSS50Q9UI38 385 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 TRAV20A0A0B4J274 112 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 C4orf17Q53FE4 359 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 CDPF1Q6NVV7 123 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 ZNF100Q8IYN0 542 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 ARV1Q9H2C2 271 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 FAM86C1Q9NVL1 165 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 LOXL2Q9Y4K0 774 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 RBFOX3A6NFN3 312 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 C5orf52A6NGY3 159 aa12.85□□□□□ -0.35
USP28-214ENST00000545540 NTN3O00634 580 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms