RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 SEBOXQ9HB31 216 aaPredicted RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 HES4Q9HCC6 221 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 SPAG4Q9NPE6 437 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 DCAF13Q9NV06 445 aaKnown RBP3.11□□□□□ -1.91
SNHG1-220ENST00000544550 TAS2R3Q9NYW6 316 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 KIAA1456Q9P272 454 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 PEMTQ9UBM1 199 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 HSPB7Q9UBY9 170 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 COPS3Q9UNS2 423 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 WSB1Q9Y6I7 421 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 COMMD3-BMI1R4GMX3 469 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 HECTD4Q9Y4D8 3996 aa3.11□□□□□ -1.91
SNHG1-220ENST00000544550 A0A1B0GVY2 172 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 DHRS12A0PJE2 317 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 MEX3AA1L020 520 aaKnown RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TVP23AA6NH52 213 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 RHODO00212 210 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF593O00488 134 aaPredicted RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ANGPT2O15123 496 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 SNNO75324 88 aaPredicted RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 MMP23AO75900 390 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TPPPO94811 219 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 CLEC3BP05452 202 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 LGALS1P09382 135 aaKnown RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 H2BFMP0C1H6 154 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 GABRR1P24046 479 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 FMO3P31513 532 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 SOX6P35712 828 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 PTGFRP43088 359 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 OMPP47874 163 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 RAB9AP51151 201 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 SLC18A1P54219 525 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 P2RX3P56373 397 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TCTAP57738 103 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 CDC42P60953 191 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 SELENOWP63302 87 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 RIPPLY1Q0D2K3 151 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 HNF4GQ14541 408 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TBCEQ15813 527 aaPredicted RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 LRRC23Q53EV4 343 aaPredicted RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 AGKQ53H12 422 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 CYBRD1Q53TN4 286 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF684Q5T5D7 378 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 PRAMEF5Q5TYX0 476 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 PLCXD3Q63HM9 321 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TBPL2Q6SJ96 375 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 LINC00322Q6ZN03 302 aaPredicted RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 MOB3CQ70IA8 216 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF575Q86XF7 245 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 CATSPERDQ86XM0 798 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 LAX1Q8IWV1 398 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ENTHD1Q8IYW4 607 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 Q8N402 240 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 Q8N9W7 124 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 DNAAF1Q8NEP3 725 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 OR2K2Q8NGT1 345 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 OR2T10Q8NGZ9 312 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 HAVCR2Q8TDQ0 301 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TMEM170AQ8WVE7 144 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 RNF133Q8WVZ7 376 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 CORO2AQ92828 525 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TPD52L3Q96J77 140 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF488Q96MN9 340 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 OR5B12Q96R08 314 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 PAIP2Q9BPZ3 127 aaKnown RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 NABP2Q9BQ15 211 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 QTRT1Q9BXR0 403 aaKnown RBP3.1□□□□□ -1.91
SNHG1-220ENST00000544550 PKIBQ9C010 78 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 TOLLIPQ9H0E2 274 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF286AQ9HBT8 521 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 SLC25A19Q9HC21 320 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 SIGLEC8Q9NYZ4 499 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 OR6C3Q9NZP0 311 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 DNAJC27Q9NZQ0 273 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ERGIC3Q9Y282 383 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 ABCA13Q86UQ4 5058 aa3.1□□□□□ -1.91
SNHG1-220ENST00000544550 A0A1W2PPI3 338 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 A0A1W2PRQ8 180 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 FAM172BPA6NC97 362 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 CBY3A6NI87 242 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 CGB1A6NKQ9 187 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 ZNF729A6NN14 1252 aaPredicted RBP3.09□□□□□ -1.91
SNHG1-220ENST00000544550 PRSS47A8MTI9 375 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 J3QR06 171 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 FFAR1O14842 300 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 E2F6O75461 281 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 RGS11O94810 467 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 MOSP00540 346 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 NRASP01111 189 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 IL1AP01583 271 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 HSPB1P04792 205 aaKnown RBP3.09□□□□□ -1.91
SNHG1-220ENST00000544550 H2AFXP16104 143 aaPredicted RBP3.09□□□□□ -1.91
SNHG1-220ENST00000544550 ZP3P21754 424 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 MPZP25189 248 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 PYCR1P32322 319 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 KDELR2P33947 212 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 OPRL1P41146 370 aa3.09□□□□□ -1.91
SNHG1-220ENST00000544550 YAP1P46937 504 aaKnown RBP3.09□□□□□ -1.91
SNHG1-220ENST00000544550 GZMMP51124 257 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms