RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 DLL3Q9NYJ7 618 aa15.35■□□□□ 0.05
VIM-209ENST00000544301 MED12LQ86YW9 2145 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 BORCS7-ASMTA0A0B4J1R7 106 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 NKX2-8O15522 239 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 CD82P27701 267 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 NHLH2Q02577 135 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 ZNF880Q6PDB4 577 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 Q6ZRG5 221 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 LILRB1Q8NHL6 650 aaPredicted RBP15.34■□□□□ 0.05
VIM-209ENST00000544301 C11orf1Q9H5F2 150 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 FRYQ5TBA9 3013 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 A0A1W2PR80 420 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 IGHV1-2P23083 117 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 ID4P47928 161 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 SRSF6Q13247 344 aaKnown RBP15.34■□□□□ 0.05
VIM-209ENST00000544301 GNMTQ14749 295 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 GINS3Q9BRX5 216 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 SEC11CQ9BY50 192 aa15.34■□□□□ 0.05
VIM-209ENST00000544301 ESPL1Q14674 2120 aa15.33■□□□□ 0.05
VIM-209ENST00000544301 CDRT15L2A8MXV6 281 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 J3QW42 95 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 DEGS1O15121 323 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 SMPD2O60906 423 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 SEC11BP0C7V7 166 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 F2RL1P55085 397 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 Q6P435 159 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 WDR86Q86TI4 376 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 SPAG16Q8N0X2 631 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 NRIP2Q9BQI9 281 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 ADAT1Q9BUB4 502 aaKnown RBP15.33■□□□□ 0.04
VIM-209ENST00000544301 RTL8AQ9BWD3 113 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 FAM212BQ9NTI7 297 aaPredicted RBP15.33■□□□□ 0.04
VIM-209ENST00000544301 CLCF1Q9UBD9 225 aa15.33■□□□□ 0.04
VIM-209ENST00000544301 RNASEK-C17orf49H0YIS7 233 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 UCP1P25874 307 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 CCL11P51671 97 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 PPP1CBP62140 327 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 HLA-DRB3P79483 266 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 ZNF324BQ6AW86 544 aaPredicted RBP15.32■□□□□ 0.04
VIM-209ENST00000544301 GCNT2Q8N0V5 402 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 LYPD6BQ8NI32 183 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 SPIN2AQ99865 258 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 SPIN2BQ9BPZ2 258 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 OR2J1Q9GZK6 312 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 GLRX2Q9NS18 164 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 AGPAT2O15120 278 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 ADAM20O43506 726 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 IGHG3P01860 377 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 SPP1P10451 314 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 ZNF44P15621 663 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 NKX2-1P43699 371 aaPredicted RBP15.32■□□□□ 0.04
VIM-209ENST00000544301 IDH3GP51553 393 aaPredicted RBP15.32■□□□□ 0.04
VIM-209ENST00000544301 UBE2NP61088 152 aaKnown RBP15.32■□□□□ 0.04
VIM-209ENST00000544301 TGFBR3Q03167 851 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 MRPL49Q13405 166 aaKnown RBP15.32■□□□□ 0.04
VIM-209ENST00000544301 SWI5Q1ZZU3 235 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 FAM76BQ5HYJ3 339 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 CMTM1Q8IZ96 169 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 SUMF1Q8NBK3 374 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 CLRN3Q8NCR9 226 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 BOD1Q96IK1 185 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 PARP12Q9H0J9 701 aaKnown RBP15.32■□□□□ 0.04
VIM-209ENST00000544301 CDH20Q9HBT6 801 aa15.32■□□□□ 0.04
VIM-209ENST00000544301 PURGQ9UJV8 347 aaKnown RBP15.32■□□□□ 0.04
VIM-209ENST00000544301 DUXBA0A1W2PPF3 345 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 LRP5LA4QPB2 252 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 TOR1AO14656 332 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 PGLYRP1O75594 196 aaPredicted RBP15.31■□□□□ 0.04
VIM-209ENST00000544301 LYZL6O75951 148 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 F12P00748 615 aaPredicted RBP15.31■□□□□ 0.04
VIM-209ENST00000544301 CD5P06127 495 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 OR8U9P0C7N5 309 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 ERVS71-1P61550 626 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 POLR2GP62487 172 aaKnown RBP eCLIP15.31■□□□□ 0.04
VIM-209ENST00000544301 EWSR1Q01844 656 aaKnown RBP eCLIP15.31■□□□□ 0.04
VIM-209ENST00000544301 NMSQ5H8A3 153 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 SCCPDHQ8NBX0 429 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 FDCSPQ8NFU4 85 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 OR8U1Q8NH10 309 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 OR10J5Q8NHC4 309 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 CABLES2Q9BTV7 478 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 OR2W1Q9Y3N9 320 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 PRRC2CQ9Y520 2896 aaKnown RBP15.31■□□□□ 0.04
VIM-209ENST00000544301 CLEC18AA5D8T8 446 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 TNFSF12O43508 249 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 DANCRP0C864 163 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 H1FOOQ8IZA3 346 aaPredicted RBP15.31■□□□□ 0.04
VIM-209ENST00000544301 OR2C3Q8N628 320 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 CLEC18CQ8NCF0 446 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 DEFB124Q8NES8 71 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 KIRREL1Q96J84 757 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 TRIB1Q96RU8 372 aa15.31■□□□□ 0.04
VIM-209ENST00000544301 FAM24AA6NFZ4 105 aa15.3■□□□□ 0.04
VIM-209ENST00000544301 H0Y980 276 aa15.3■□□□□ 0.04
VIM-209ENST00000544301 WISP2O76076 250 aa15.3■□□□□ 0.04
VIM-209ENST00000544301 ERVK11-1P61568 191 aa15.3■□□□□ 0.04
VIM-209ENST00000544301 CXorf66Q5JRM2 361 aaPredicted RBP15.3■□□□□ 0.04
VIM-209ENST00000544301 FAM214BQ7L5A3 538 aa15.3■□□□□ 0.04
VIM-209ENST00000544301 OR5D13Q8NGL4 314 aa15.3■□□□□ 0.04
VIM-209ENST00000544301 FTH1P19P0C7X4 201 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 150.4 ms