RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 PARP11Q9NR21 331 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 SIRT4Q9Y6E7 314 aaPredicted RBP9.66□□□□□ -0.86
CDH3-203ENST00000542274 TMEM150CB9EJG8 249 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 CTDSPLO15194 276 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 WISP1O95388 367 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 SRPXP78539 464 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 CD226Q15762 336 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 MEP1BQ16820 701 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 CBLN3Q6UW01 205 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 ZNF485Q8NCK3 441 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 ANAPC16Q96DE5 110 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 LMF2Q9BU23 707 aaKnown RBP9.66□□□□□ -0.86
CDH3-203ENST00000542274 RTN4RQ9BZR6 473 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 MED31Q9Y3C7 131 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 MSRB2Q9Y3D2 182 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 MPDZO75970 2070 aa9.66□□□□□ -0.86
CDH3-203ENST00000542274 GPANK1O95872 356 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 CSTBP04080 98 aaKnown RBP9.65□□□□□ -0.86
CDH3-203ENST00000542274 FBLP22087 321 aaKnown RBP9.65□□□□□ -0.86
CDH3-203ENST00000542274 CDKN2AP42771 156 aaKnown RBP9.65□□□□□ -0.86
CDH3-203ENST00000542274 IL13RA1P78552 427 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 FHL1Q13642 323 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 ZNF266Q14584 549 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 TP53I3Q53FA7 332 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 ZNF615Q8N8J6 731 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 ZNF709Q8N972 641 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 DTWD2Q8NBA8 298 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 SEC22AQ96IW7 307 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 TIMP4Q99727 224 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 KLK11Q9UBX7 282 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 UQCR10Q9UDW1 63 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 OR51B2Q9Y5P1 312 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 DUX1O43812 170 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 S1PR2O95136 353 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 SLC6A6P31641 620 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 GABRA2P47869 451 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 ANKRD55Q3KP44 614 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 PDLIM3Q53GG5 364 aaPredicted RBP9.65□□□□□ -0.86
CDH3-203ENST00000542274 SOHLH1Q5JUK2 328 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 SUMF2Q8NBJ7 301 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 ZNRF4Q8WWF5 429 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 HOXB13Q92826 284 aaPredicted RBP9.65□□□□□ -0.86
CDH3-203ENST00000542274 KISS1RQ969F8 398 aaPredicted RBP9.65□□□□□ -0.86
CDH3-203ENST00000542274 SLC25A38Q96DW6 304 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 SCRT1Q9BWW7 348 aa9.65□□□□□ -0.86
CDH3-203ENST00000542274 ADAMTS20P59510 1910 aa9.65□□□□□ -0.87
CDH3-203ENST00000542274 H7BYZ3 331 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 FUT3P21217 361 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 HTR1FP30939 366 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 ARL4DP49703 201 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 TMPRSS3P57727 454 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 TAS2R19P59542 299 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 SRSF6Q13247 344 aaKnown RBP9.64□□□□□ -0.87
CDH3-203ENST00000542274 SLC25A35Q3KQZ1 300 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 RPTNQ6XPR3 784 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 ZNF595Q8IYB9 648 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 CHST4Q8NCG5 386 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 OR1L3Q8NH93 324 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 ZPLD1Q8TCW7 415 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 SAP25Q8TEE9 199 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 PTPMT1Q8WUK0 201 aaPredicted RBP9.64□□□□□ -0.87
CDH3-203ENST00000542274 DERL1Q9BUN8 251 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 OR11A1Q9GZK7 315 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 NXF5Q9H1B4 397 aaKnown RBP9.64□□□□□ -0.87
CDH3-203ENST00000542274 ZNF703Q9H7S9 590 aaPredicted RBP9.64□□□□□ -0.87
CDH3-203ENST00000542274 PLEKHA1Q9HB21 404 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 MRPS33Q9Y291 106 aaKnown RBP9.64□□□□□ -0.87
CDH3-203ENST00000542274 RALGAPA1Q6GYQ0 2036 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 LY6G6EA0A0G2JKS1 128 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 TMEM129A0AVI4 362 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 TNFRSF13BO14836 293 aaPredicted RBP9.64□□□□□ -0.87
CDH3-203ENST00000542274 GLIPR1P48060 266 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 DHRS2Q13268 280 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 FAM27D1Q5T7N8 215 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 SPATA31B1PQ5VZV4 182 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 OR4K17Q8NGC6 315 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 OR4K13Q8NH42 304 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 IL22RA2Q969J5 263 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 ACY3Q96HD9 319 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 GNRHR2Q96P88 292 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 SLC25A21Q9BQT8 299 aaPredicted RBP9.64□□□□□ -0.87
CDH3-203ENST00000542274 C1orf198Q9H425 327 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 NAT8Q9UHE5 227 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 U3KQA8 63 aa9.64□□□□□ -0.87
CDH3-203ENST00000542274 KIF26BQ2KJY2 2108 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 H3BMH7 237 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 H3BQ15 152 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 ZNF208O43345 1280 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 MAS1P04201 325 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 CD33P20138 364 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 SLC35A1P78382 337 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 IGLV3-21P80748 117 aaPredicted RBP9.63□□□□□ -0.87
CDH3-203ENST00000542274 SRSF4Q08170 494 aaKnown RBP9.63□□□□□ -0.87
CDH3-203ENST00000542274 FUT7Q11130 342 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 ASCL4Q6XD76 172 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 C16orf47Q6ZP98 133 aaPredicted RBP9.63□□□□□ -0.87
CDH3-203ENST00000542274 ZNF788Q6ZQV5 615 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 TMEM9BQ9NQ34 198 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 SLC7A10Q9NS82 523 aa9.63□□□□□ -0.87
CDH3-203ENST00000542274 FUT9Q9Y231 359 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms