RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 RBMXP38159 391 aaKnown RBP8.2□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF136P52737 540 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 CLDN2P57739 230 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 LCN2P80188 198 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 C1QL3Q5VWW1 255 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 NEGR1Q7Z3B1 354 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 GLYATL1Q969I3 302 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 ABHD17AQ96GS6 310 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 FAM103A1Q9BTL3 118 aaKnown RBP8.2□□□□□ -1.1
CLIP1-214ENST00000540539 RBM24Q9BX46 236 aaKnown RBP8.2□□□□□ -1.1
CLIP1-214ENST00000540539 GLIPR2Q9H4G4 154 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 AHSPQ9NZD4 102 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 CD207Q9UJ71 328 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 HEATR5BQ9P2D3 2071 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 FANCMQ8IYD8 2048 aa8.2□□□□□ -1.1
CLIP1-214ENST00000540539 F2Z2F3 143 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 KLRC4-KLRK1H3BQV0 150 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 TNFRSF10CO14798 259 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 SLC6A6P31641 620 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 SRP14P37108 136 aaKnown RBP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 NKX2-1P43699 371 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF117Q03924 483 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 TCTEX1D4Q5JR98 221 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 DPY19L4Q7Z388 723 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 ATOH7Q8N100 152 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 FBXL14Q8N1E6 418 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF740Q8NDX6 193 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 DDIT4LQ96D03 193 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 SS18L2Q9UHA2 77 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 LSM7Q9UK45 103 aaKnown RBP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 A0A0U1RQK1 487 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 NKX2-6A6NCS4 301 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 LYPD3O95274 346 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 CTSEP14091 401 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 ALOX5APP20292 161 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 RUNX1Q01196 453 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 EWSR1Q01844 656 aaKnown RBP eCLIP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 FHL1Q13642 323 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 ELAVL3Q14576 367 aaKnown RBP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF266Q14584 549 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 HIST3H3Q16695 136 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 TRMT12Q53H54 448 aaKnown RBP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 VAX1Q5SQQ9 334 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 CCDC144NLQ6NUI1 221 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 UFSP1Q6NVU6 142 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 Q6ZNB5 142 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 TCF23Q7RTU1 214 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 DTWD2Q8NBA8 298 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 OR13G1Q8NGZ3 307 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 ASB5Q8WWX0 329 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 NMNAT3Q96T66 252 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 SSBP4Q9BWG4 385 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 HINT2Q9BX68 163 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 UBE2ZQ9H832 354 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-214ENST00000540539 SELENOKQ9Y6D0 94 aa8.19□□□□□ -1.1
CLIP1-214ENST00000540539 TRAV1-1A0A0B4J248 108 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 DCDC2BA2VCK2 349 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 OR2AG2A6NM03 316 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 J3QR06 171 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 K7EQM0 130 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 PLPP1O14494 284 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 ERI3O43414 337 aaKnown RBP8.18□□□□□ -1.1
CLIP1-214ENST00000540539 CLDN7O95471 211 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 STAG3L2P0CL84 134 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF77Q15935 545 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 TMEM249Q2WGJ8 235 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 SIGLECL1Q8N7X8 197 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 AGMATQ9BSE5 352 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 MAGEH1Q9H213 219 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 GEMIN7Q9H840 131 aaKnown RBP8.18□□□□□ -1.1
CLIP1-214ENST00000540539 RXFP3Q9NSD7 469 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 TP73-AS1Q9UF72 201 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 MUC21A0A0G2JKD1 596 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 MUC21A0A140T8X8 626 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 CSNK2A2P19784 350 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-214ENST00000540539 LHX2P50458 406 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 PMP22Q01453 160 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 TSTA3Q13630 321 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-214ENST00000540539 PDGFRLQ15198 375 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 CEACAM21Q3KPI0 293 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 MUC21Q5SSG8 566 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 DCST2Q5T1A1 773 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 LINC01590Q5TEZ4 76 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 FAM78BQ5VT40 261 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 KCNIP4Q6PIL6 250 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 LHFPL1Q86WI0 220 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 OR2M3Q8NG83 312 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 TMEM171Q8WVE6 324 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 RASD2Q96D21 266 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 SCGB3A2Q96PL1 93 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 FAM110AQ9BQ89 295 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 LMF2Q9BU23 707 aaKnown RBP8.18□□□□□ -1.1
CLIP1-214ENST00000540539 DERL1Q9BUN8 251 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 TM2D1Q9BX74 207 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 MTHFD2LQ9H903 347 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-214ENST00000540539 NPVFQ9HCQ7 196 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF443Q9Y2A4 671 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-214ENST00000540539 COL6A3P12111 3177 aa8.18□□□□□ -1.1
CLIP1-214ENST00000540539 TRBV7-9A0A0J9YWB2 115 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 NPIPB15A6NHN6 443 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms