RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ZNF250P15622 560 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 KITLGP21583 273 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 UCP1P25874 307 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 SULT1A2P50226 295 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 RAB5CP51148 216 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 ERVK11-1P61568 191 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 SWI5Q1ZZU3 235 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 DEFB109BQ30KR1 87 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 ZNF718Q3SXZ3 478 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 TMEM268Q5VZI3 342 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 TRAT1Q6PIZ9 186 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 BRICD5Q6PL45 260 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 MEX3BQ6ZN04 569 aaKnown RBP5.65□□□□□ -1.5
USP28-206ENST00000538224 ZNF497Q6ZNH5 498 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 TBC1D26Q86UD7 250 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 GAPTQ8N292 157 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 COMMD1Q8N668 190 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 SCCPDHQ8NBX0 429 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 CLEC18CQ8NCF0 446 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 OR5D13Q8NGL4 314 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 MBD3L2Q8NHZ7 208 aaPredicted RBP5.65□□□□□ -1.5
USP28-206ENST00000538224 SLC25A40Q8TBP6 338 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 FAM216AQ8WUB2 273 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 SECTM1Q8WVN6 248 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 TMED6Q8WW62 240 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 AKR1E2Q96JD6 320 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 NRIP2Q9BQI9 281 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 OR2J1Q9GZK6 312 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 SLC25A31Q9H0C2 315 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 CXXC4Q9H2H0 198 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 PARP11Q9NR21 331 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 PLSCR4Q9NRQ2 329 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 LIN7CQ9NUP9 197 aaKnown RBP5.65□□□□□ -1.5
USP28-206ENST00000538224 PRR13Q9NZ81 148 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 CRIM1Q9NZV1 1036 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 ZNF581Q9P0T4 197 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 TAAR3PQ9P1P4 343 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 ZNF629Q9UEG4 869 aaPredicted RBP5.65□□□□□ -1.5
USP28-206ENST00000538224 FBXL17Q9UF56 701 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 OR2W1Q9Y3N9 320 aa5.65□□□□□ -1.5
USP28-206ENST00000538224 OTOGLQ3ZCN5 2332 aa5.65□□□□□ -1.51
USP28-206ENST00000538224 RTTNQ86VV8 2226 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 TMEM30CPA0ZSE6 113 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 ZNF705EA8MWA4 302 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 HSPB6O14558 160 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 TIMM8AO60220 97 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 IGLV1-44P01699 117 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 MBPP02686 304 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 HOXD4P09016 255 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 SCTP09683 121 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 SEC11BP0C7V7 166 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 VDAC1P21796 283 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 GCH1P30793 250 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 GNRHRP30968 328 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 CD200P41217 278 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 NBL1P41271 181 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 KIR2DL2P43627 348 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 NKX2-1P43699 371 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 F2RL1P55085 397 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 VAMP2P63027 116 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 BAXQ07812 192 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 ZNF154Q13106 437 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 ZNF266Q14584 549 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 PDCD1Q15116 288 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 TSC22D1Q15714 1073 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 MSMO1Q15800 293 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 SP6Q3SY56 376 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 IGSF11Q5DX21 431 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 SPATA46Q5T0L3 261 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 MBNL2Q5VZF2 373 aaKnown RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 Q6P435 159 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 Q6ZPA2 131 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 BHLHA15Q7RTS1 189 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 LYZL2Q7Z4W2 148 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 FOXRED2Q8IWF2 684 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 H1FOOQ8IZA3 346 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 GCNT2Q8N0V5 402 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 SPAG16Q8N0X2 631 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 SLC35G3Q8N808 338 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 C9orf106Q8NAJ2 232 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 OR8G5Q8NG78 346 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 OR10V1Q8NGI7 309 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 OR4D5Q8NGN0 318 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 OR11L1Q8NGX0 322 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 PRR7Q8TB68 274 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 KLF14Q8TD94 323 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 CCDC120Q96HB5 630 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 CYYR1Q96J86 154 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 SMIM8Q96KF7 97 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 TP53RKQ96S44 253 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 SPOCK3Q9BQ16 436 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 TLNRD1Q9H1K6 362 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 OR51B6Q9H340 312 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 HES4Q9HCC6 221 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 OR2S2Q9NQN1 319 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 FAM212BQ9NTI7 297 aaPredicted RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 KCNIP1Q9NZI2 227 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 IL36RNQ9UBH0 155 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 PURGQ9UJV8 347 aaKnown RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 STRAPQ9Y3F4 350 aaKnown RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms