RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 GP2P55259 537 aaKnown RBP11.91□□□□□ -0.5
USP28-204ENST00000537642 MPV17LQ2QL34 196 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 GLIPR1L1Q6UWM5 242 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 UNQ9370/PRO34162Q6UXP9 181 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 LINC00596Q86U02 117 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 TMEM219Q86XT9 240 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 CDH26Q8IXH8 852 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 ZNF565Q8N9K5 539 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 OR4C13Q8NGP0 309 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 ZNF596Q8TC21 504 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 THRSPQ92748 146 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 KIRREL1Q96J84 757 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 DUSP21Q9H596 190 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 LINC00574Q9H8X3 128 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 PCDHB16Q9NRJ7 776 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 CALYQ9NYX4 217 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 DPM3Q9P2X0 92 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 TPRKBQ9Y3C4 175 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 TRAV39A0A0B4J263 110 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 F2RL2O00254 374 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 IL1AP01583 271 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 NFYBP25208 207 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 MAPK3P27361 379 aaPredicted RBP11.9□□□□□ -0.5
USP28-204ENST00000537642 EFNB2P52799 333 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 GPR176Q14439 515 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 MED22Q15528 200 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 HLA-DRB5Q30154 266 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 ACSM3Q53FZ2 586 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 FAM27D1Q5T7N8 215 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 AWAT2Q6E213 333 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 IZUMO2Q6UXV1 221 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 MS4A15Q8N5U1 240 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 MRGPRDQ8TDS7 321 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 TMED9Q9BVK6 235 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 NPFFR1Q9GZQ6 430 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 VCX3BQ9H321 246 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 TCF7L1Q9HCS4 588 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 IDI2-AS1Q9NZ38 188 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 PITPNC1Q9UKF7 332 aa11.9□□□□□ -0.5
USP28-204ENST00000537642 FAM90A22PA8MWA6 464 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 NPIPB11E5RHQ5 1161 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 ATAD3CQ5T2N8 411 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 TREML4Q6UXN2 200 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 NKAIN3Q8N8D7 197 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 RFESDQ8TAC1 157 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 MRPS24Q96EL2 167 aaKnown RBP11.89□□□□□ -0.51
USP28-204ENST00000537642 BANF2Q9H503 90 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 ZNF702PQ9H963 129 aa11.89□□□□□ -0.51
USP28-204ENST00000537642 TMEM30CPA0ZSE6 113 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 LEUTXA8MZ59 168 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 LY6LH3BQJ8 138 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 BUB1B-PAK6H3BSN5 160 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 TOR1AO14656 332 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 TIMM23O14925 209 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 RGS10O43665 173 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 SC5DO75845 299 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 CRHBPP24387 322 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 SSTR5P35346 364 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 PRRX1P54821 245 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 GPR50Q13585 617 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 LTC4SQ16873 150 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 TPTE2P1Q5T6R2 138 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 LRRTM1Q86UE6 522 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 TMEM104Q8NE00 496 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 OR9G1Q8NH87 305 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 OR2T6Q8NHC8 308 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 LEAP2Q969E1 77 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 UQCC2Q9BRT2 126 aa11.88□□□□□ -0.51
USP28-204ENST00000537642 RCC2Q9P258 522 aaKnown RBP11.88□□□□□ -0.51
USP28-204ENST00000537642 IGHV3-7P01780 117 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 MGMTP16455 207 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 CD24P25063 80 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 HSPA13P48723 471 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 RBM39Q14498 530 aaKnown RBP11.87□□□□□ -0.51
USP28-204ENST00000537642 HABP2Q14520 560 aaPredicted RBP11.87□□□□□ -0.51
USP28-204ENST00000537642 FBLN7Q53RD9 439 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 LIPKQ5VXJ0 399 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 ZNF497Q6ZNH5 498 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 CEACAM19Q7Z692 300 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 Q8N2B8 174 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 OR10A7Q8NGE5 316 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 NEK7Q8TDX7 302 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 UFD1Q92890 307 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 CREB3L1Q96BA8 519 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 CYYR1Q96J86 154 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 Q96M66 194 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 SELENOIQ9C0D9 397 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 MMP28Q9H239 520 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 SPACA1Q9HBV2 294 aa11.87□□□□□ -0.51
USP28-204ENST00000537642 TET2Q6N021 2002 aaPredicted RBP11.87□□□□□ -0.51
USP28-204ENST00000537642 C15orf65H3BRN8 121 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 J3QR06 171 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 M0QZ24 198 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 CRTAPO75718 401 aaPredicted RBP11.86□□□□□ -0.51
USP28-204ENST00000537642 MT-ND4P03905 459 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 UCHL1P09936 223 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 HSMCR30P0CW71 290 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 GZMHP20718 246 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 CEACAM3P40198 252 aa11.86□□□□□ -0.51
USP28-204ENST00000537642 VHLP40337 213 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms