RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZADH2Q8N4Q0 377 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 KRTCAP2Q8N6L1 136 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 ZNF676Q8N7Q3 588 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 C8orf31Q8N9H6 132 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 OR5D13Q8NGL4 314 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 OR4X1Q8NH49 305 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 OR13C6PQ8NH95 151 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 SYNPRQ8TBG9 265 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 GPR148Q8TDV2 347 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 PP6455Q8WZ26 134 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 TM4SF19Q96DZ7 209 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 ADTRPQ96IZ2 230 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 PGLYRP2Q96PD5 576 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 TRIB3Q96RU7 358 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 C1QTNF4Q9BXJ3 329 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 CHIAQ9BZP6 476 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 NMES1Q9C002 83 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 NXF5Q9H1B4 397 aaKnown RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 WDR13Q9H1Z4 485 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 MEPEQ9NQ76 525 aaPredicted RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 SIGLEC8Q9NYZ4 499 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 KCNIP1Q9NZI2 227 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 NUDT4Q9NZJ9 180 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 RNF115Q9Y4L5 304 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 IER3IP1Q9Y5U9 82 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 ETV7Q9Y603 341 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 GLI3P10071 1580 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 ADAMTS7Q9UKP4 1686 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 TRPM7Q96QT4 1865 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 DUOX1Q9NRD9 1551 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 TRBV4-1A0A0J9YWV2 114 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 FEZF1A0PJY2 475 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 MAP1LC3B2A6NCE7 125 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GAGE12JA6NER3 117 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 WIPF3A6NGB9 483 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 C3orf70A6NLC5 250 aaPredicted RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 CD300LBA8K4G0 201 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 H3BQ15 152 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 XKRYO14609 159 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 NDUFS4O43181 175 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 MLNRO43193 412 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 TNFSF14O43557 240 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 DNPH1O43598 174 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 ALOX12BO75342 701 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GAGE7O76087 117 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 APOA2P02652 100 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 ATP1B1P05026 303 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 CXCL1P09341 107 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GAGE12FP0CL80 117 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GAGE12GP0CL81 117 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GAGE12IP0CL82 117 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 TFPIP10646 304 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 TSPOP30536 169 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 CFHR2P36980 270 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 TFPI2P48307 235 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 PRLHRP49683 370 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 DUSP3P51452 185 aaPredicted RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 POLR2JP52435 117 aaKnown RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 PGGT1BP53609 377 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 SEC61GP60059 68 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 UBE2MP61081 183 aaKnown RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 SLC35B1P78383 322 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 RAE1P78406 368 aaKnown RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 AKR1C1Q04828 323 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GAGE4Q13068 117 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 PDE7AQ13946 482 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GNMTQ14749 295 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 MMDQ15546 238 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 DUSP5Q16690 384 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 CCSMST1Q4G0I0 132 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 PRR30Q53SZ7 412 aaPredicted RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 C6orf226Q5I0X4 101 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 FAM182AQ5T1J6 154 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 UTF1Q5T230 341 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 FAM90A2PQ658T7 463 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 Q6Q795 121 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 TPRG1Q6ZUI0 275 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 MARCH9Q86YJ5 346 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OR4N5Q8IXE1 308 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 ZNF683Q8IZ20 524 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 ZNF567Q8N184 647 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 PGBD5Q8N414 524 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 GPR32P1Q8NGA4 272 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OR4K17Q8NGC6 315 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OR1B1Q8NGR6 318 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OR6N2Q8NGY6 317 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OR2T27Q8NH04 317 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OR8S1Q8NH09 359 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 SLC38A5Q8WUX1 472 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 NEUROG1Q92886 237 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 FGGYQ96C11 551 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 OXGR1Q96P68 337 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 PAAF1Q9BRP4 392 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 RHNO1Q9BSD3 238 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 LMF2Q9BU23 707 aaKnown RBP4.71□□□□□ -1.66
CD44-236ENST00000533222 ABHD14AQ9BUJ0 271 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 EFCAB11Q9BUY7 163 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 ABHD6Q9BV23 337 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 KRTAP4-2Q9BYR5 136 aa4.71□□□□□ -1.66
CD44-236ENST00000533222 MAP1LC3BQ9GZQ8 125 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms