RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CALYQ9NYX4 217 aa2.53□□□□□ -2
CD44-235ENST00000532339 EMC3Q9P0I2 261 aa2.53□□□□□ -2
CD44-235ENST00000532339 MYEF2Q9P2K5 600 aaKnown RBP2.53□□□□□ -2
CD44-235ENST00000532339 PITPNC1Q9UKF7 332 aa2.53□□□□□ -2
CD44-235ENST00000532339 CFL2Q9Y281 166 aa2.53□□□□□ -2
CD44-235ENST00000532339 CDH10Q9Y6N8 788 aa2.53□□□□□ -2
CD44-235ENST00000532339 SORL1Q92673 2214 aa2.53□□□□□ -2
CD44-235ENST00000532339 IGHV2OR16-5A0A0B4J2B6 119 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 GJE1A6NN92 205 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 ZNF879B4DU55 563 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 SEC14L6B5MCN3 397 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 H3BUX3 64 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 PRMT5O14744 637 aaPredicted RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 SOX15O60248 233 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 SUPT7LO94864 414 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 OR2F2O95006 317 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 H6PDO95479 791 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 ALDOBP05062 364 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 COX7A1P24310 79 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 GTF2E2P29084 291 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 SLC6A1P30531 599 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 TFPI2P48307 235 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 UBE2NP61088 152 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 RPS23P62266 143 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 PSPHP78330 225 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 MRPS22P82650 360 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 IL5RAQ01344 420 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 PDIA2Q13087 525 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 ARFRP1Q13795 201 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 STK38Q15208 465 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 HIKESHIQ53FT3 197 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 LY6G6FQ5SQ64 297 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 FAM27D1Q5T7N8 215 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 C9orf135Q5VTT2 229 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 FAM173BQ6P4H8 233 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 BZW1Q7L1Q6 419 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 LHFPL3Q86UP9 236 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 LRP11Q86VZ4 500 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 LRRC28Q86X40 367 aaPredicted RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 PUSL1Q8N0Z8 303 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 LINC00301Q8NCQ3 95 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 OR2L5Q8NG80 312 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 OR7G1Q8NGA0 311 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 OR52E4Q8NGH9 312 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 OR1S2Q8NGQ3 325 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 SLC7A13Q8TCU3 470 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 AGR3Q8TD06 166 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 MARC2Q969Z3 335 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 TMEM101Q96IK0 257 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 MAGEB18Q96M61 343 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 ZNF317Q96PQ6 595 aaPredicted RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 SDHCQ99643 169 aaPredicted RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 ZNF649Q9BS31 505 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 ZNF717Q9BY31 904 aaPredicted RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 SPNS1Q9H2V7 528 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 CXorf21Q9HAI6 301 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 PLSCR3Q9NRY6 295 aa2.52□□□□□ -2.01
CD44-235ENST00000532339 LYARQ9NX58 379 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 NOSIPQ9Y314 301 aaKnown RBP2.52□□□□□ -2.01
CD44-235ENST00000532339 IGLV3-32A0A0A0MS00 114 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 ARPC4-TTLL3A0A0A6YYG9 625 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 IGHV3-15A0A0B4J1V0 119 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 SMCO3A2RU48 225 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 OR51F1A6NGY5 319 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 CEACAM18A8MTB9 384 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 F8VZ95 297 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 H0YIV9 168 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 WRBO00258 174 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 RAB29O14966 203 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 EIF3HO15372 352 aaKnown RBP eCLIP2.51□□□□□ -2.01
CD44-235ENST00000532339 ENSAO43768 121 aaKnown RBP2.51□□□□□ -2.01
CD44-235ENST00000532339 CHST1O43916 411 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 NPIPB7O75200 414 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 MRPL33O75394 65 aaKnown RBP2.51□□□□□ -2.01
CD44-235ENST00000532339 GPR75O95800 540 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 PAHP00439 452 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 CHTF8P0CG12 524 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 SLC35E2BP0CK96 405 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 OR8G3PP0DMU2 310 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 CPN2P22792 545 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 GABRR1P24046 479 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 FMO3P31513 532 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 EVI2BP34910 448 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 RPL22P35268 128 aaKnown RBP2.51□□□□□ -2.01
CD44-235ENST00000532339 INSL3P51460 131 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 CAV2P51636 162 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 GPX6P59796 221 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 REEP5Q00765 189 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 STX5Q13190 355 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 KIAA0087Q14695 138 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 LY6EQ16553 131 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 CPTPQ5TA50 214 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 RESP18Q5W5W9 173 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 TMEM61Q8N0U2 210 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 LYPD1Q8N2G4 141 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 PNKDQ8N490 385 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 PQLC3Q8N755 202 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 TTLQ8NG68 377 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 OR4X2Q8NGF9 303 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 OR52K1Q8NGK4 314 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms