RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MRPL30Q8TCC3 161 aaKnown RBP17.77■□□□□ 0.44
VPS28-212ENST00000530836 POLQO75417 2590 aa17.77■□□□□ 0.44
VPS28-212ENST00000530836 TRDCB7Z8K6 153 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 OR5H8P0DN80 308 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 PSG2P11465 335 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 MUC1P15941 1255 aaPredicted RBP17.76■□□□□ 0.43
VPS28-212ENST00000530836 EGR1P18146 543 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 PPOXP50336 477 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 DHRS11Q6UWP2 260 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 GLDNQ6ZMI3 551 aaPredicted RBP17.76■□□□□ 0.43
VPS28-212ENST00000530836 LHFPL1Q86WI0 220 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 AKAP6Q13023 2319 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 SNRPGP15A8MWD9 76 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 C3orf80F5H4A9 247 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 DANCRP0C864 163 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 SLC35E4Q6ICL7 350 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 ZNF554Q86TJ5 538 aa17.76■□□□□ 0.43
VPS28-212ENST00000530836 SDCBPO00560 298 aaPredicted RBP17.75■□□□□ 0.43
VPS28-212ENST00000530836 PSPNO60542 156 aa17.75■□□□□ 0.43
VPS28-212ENST00000530836 GLP1RP43220 463 aa17.75■□□□□ 0.43
VPS28-212ENST00000530836 RRAS2P62070 204 aaPredicted RBP17.75■□□□□ 0.43
VPS28-212ENST00000530836 COL10A1Q03692 680 aa17.75■□□□□ 0.43
VPS28-212ENST00000530836 CARTPTQ16568 116 aa17.75■□□□□ 0.43
VPS28-212ENST00000530836 TEX36Q5VZQ5 186 aa17.75■□□□□ 0.43
VPS28-212ENST00000530836 FAHD2BQ6P2I3 314 aaPredicted RBP17.75■□□□□ 0.43
VPS28-212ENST00000530836 BOLLQ8N9W6 283 aaKnown RBP17.75■□□□□ 0.43
VPS28-212ENST00000530836 FAHD2AQ96GK7 314 aa17.75■□□□□ 0.43
VPS28-212ENST00000530836 OR51J1Q9H342 316 aa17.75■□□□□ 0.43
VPS28-212ENST00000530836 CHD3Q12873 2000 aaKnown RBP17.75■□□□□ 0.43
VPS28-212ENST00000530836 IGKV1D-17A0A075B6S4 117 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 TMEM30CPA0ZSE6 113 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 CYSRT1A8MQ03 144 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 FABP7O15540 132 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 ANXA7P20073 488 aaKnown RBP17.74■□□□□ 0.43
VPS28-212ENST00000530836 FPR2P25090 351 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 CEBPDP49716 269 aaPredicted RBP17.74■□□□□ 0.43
VPS28-212ENST00000530836 ATPAF1Q5TC12 328 aaPredicted RBP17.74■□□□□ 0.43
VPS28-212ENST00000530836 Q6ZPA2 131 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 SLC36A1Q7Z2H8 476 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 OR4A4PQ8NGN8 299 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 PLPPR1Q8TBJ4 325 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 DACT3Q96B18 629 aaPredicted RBP17.74■□□□□ 0.43
VPS28-212ENST00000530836 SNX22Q96L94 193 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 CBLN4Q9NTU7 201 aa17.74■□□□□ 0.43
VPS28-212ENST00000530836 CREBL2O60519 120 aaPredicted RBP17.73■□□□□ 0.43
VPS28-212ENST00000530836 DIRAS3O95661 229 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 SOD3P08294 240 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 GSTT2P0CG29 244 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 TAS2R31P59538 309 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 CBX3Q13185 183 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 CD276Q5ZPR3 534 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 ZNF561Q8N587 486 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 CD177Q8N6Q3 437 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 ANGPTL6Q8NI99 470 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 IGFBPL1Q8WX77 278 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 MRGPRFQ96AM1 343 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 ZNF2Q9BSG1 426 aaPredicted RBP17.73■□□□□ 0.43
VPS28-212ENST00000530836 MED28Q9H204 178 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 MBNL3Q9NUK0 354 aaKnown RBP17.73■□□□□ 0.43
VPS28-212ENST00000530836 TRAPPC2LQ9UL33 140 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 LAMP3Q9UQV4 416 aa17.73■□□□□ 0.43
VPS28-212ENST00000530836 CSMD2Q7Z408 3487 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 OOEPA6NGQ2 149 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 TK1P04183 234 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 OR3A1P47881 315 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 UBE2MP61081 183 aaKnown RBP17.72■□□□□ 0.43
VPS28-212ENST00000530836 HLA-DRB3P79483 266 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 ATXN7L3Q14CW9 347 aaPredicted RBP17.72■□□□□ 0.43
VPS28-212ENST00000530836 AADACL3Q5VUY0 350 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 ZNF660Q6AZW8 331 aaPredicted RBP17.72■□□□□ 0.43
VPS28-212ENST00000530836 C17orf107Q6ZR85 190 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 PEG10Q86TG7 708 aaKnown RBP17.72■□□□□ 0.43
VPS28-212ENST00000530836 DTX2Q86UW9 622 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 ZCCHC24Q8N2G6 241 aaKnown RBP17.72■□□□□ 0.43
VPS28-212ENST00000530836 ASCC1Q8N9N2 400 aaKnown RBP17.72■□□□□ 0.43
VPS28-212ENST00000530836 ZNF222Q9UK12 451 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 PCDHB10Q9UN67 800 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 GPR132Q9UNW8 380 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 VSIG4Q9Y279 399 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 NAV2Q8IVL1 2488 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 PDZD2O15018 2839 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 TRAV38-1A0A0B4J264 116 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 ZNF737O75373 536 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 CCNKO75909 580 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 CYB5R3P00387 301 aaPredicted RBP17.72■□□□□ 0.43
VPS28-212ENST00000530836 CD8AP01732 235 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 GABRA2P47869 451 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 STUMQ69YW2 141 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 TMED4Q7Z7H5 227 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 SLC25A42Q86VD7 318 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 OR5T2Q8NGG2 359 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 OR5D13Q8NGL4 314 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 MARCH1Q8TCQ1 289 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 NINJ1Q92982 152 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 SDSLQ96GA7 329 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 BEX2Q9BXY8 128 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 DNTTIP1Q9H147 329 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 BEX1Q9HBH7 125 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 KCNIP1Q9NZI2 227 aa17.72■□□□□ 0.43
VPS28-212ENST00000530836 TMEM178BH3BS89 294 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms