RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SAV1Q9H4B6 383 aaPredicted RBP18.15■□□□□ 0.5
VPS28-205ENST00000526204 ZNF175Q9Y473 711 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 KLF2Q9Y5W3 355 aaPredicted RBP18.15■□□□□ 0.5
VPS28-205ENST00000526204 IGKV1D-13A0A0B4J2D9 117 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 PITX3O75364 302 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 IGKV1-13P0DP09 117 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 PAX6P26367 422 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 POLR2GP62487 172 aaKnown RBP eCLIP18.14■□□□□ 0.5
VPS28-205ENST00000526204 SLC10A1Q14973 349 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 NMSQ5H8A3 153 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 AVPI1Q5T686 147 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 PKIBQ9C010 78 aa18.14■□□□□ 0.5
VPS28-205ENST00000526204 LYRM2Q9NU23 88 aaPredicted RBP18.14■□□□□ 0.5
VPS28-205ENST00000526204 TNRC6AQ8NDV7 1962 aaKnown RBP18.14■□□□□ 0.49
VPS28-205ENST00000526204 IGKV1-6A0A0C4DH72 117 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 FAM24AA6NFZ4 105 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 H0Y980 276 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 ADAM20O43506 726 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 MT-CO3P00414 261 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 LMO1P25800 156 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 RAB13P51153 203 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 VAMP2P63027 116 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 FAM58AQ8N1B3 248 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 MDS2Q8NDY4 140 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 LILRB1Q8NHL6 650 aaPredicted RBP18.14■□□□□ 0.49
VPS28-205ENST00000526204 MRPL30Q8TCC3 161 aaKnown RBP18.14■□□□□ 0.49
VPS28-205ENST00000526204 SCRT1Q9BWW7 348 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 EIF5A2Q9GZV4 153 aaKnown RBP18.14■□□□□ 0.49
VPS28-205ENST00000526204 LHX6Q9UPM6 363 aa18.14■□□□□ 0.49
VPS28-205ENST00000526204 HSD17B6O14756 317 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 CD59P13987 128 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 WNT5AP41221 380 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 FHITP49789 147 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 ID3Q02535 119 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 IFT22Q9H7X7 185 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 CCL28Q9NRJ3 127 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 KMT2EQ8IZD2 1858 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 TECTAO75443 2155 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 UMAD1C9J7I0 102 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 PCSK4Q6UW60 755 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 SUMF1Q8NBK3 374 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 OR1K1Q8NGR3 316 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 RXFP4Q8TDU9 374 aa18.13■□□□□ 0.49
VPS28-205ENST00000526204 IGSF23A1L1A6 192 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 SSSCA1O60232 199 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 PGLYRP1O75594 196 aaPredicted RBP18.12■□□□□ 0.49
VPS28-205ENST00000526204 BAXQ07812 192 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 C3AR1Q16581 482 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 CXorf66Q5JRM2 361 aaPredicted RBP18.12■□□□□ 0.49
VPS28-205ENST00000526204 ZNF880Q6PDB4 577 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 C5orf24Q7Z6I8 188 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 TMEM252Q8N6L7 170 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 C15orf54Q8N8G6 183 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 ZFP62Q8NB50 900 aaPredicted RBP18.12■□□□□ 0.49
VPS28-205ENST00000526204 OR10J5Q8NHC4 309 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 LOXL4Q96JB6 756 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 PRSS50Q9UI38 385 aa18.12■□□□□ 0.49
VPS28-205ENST00000526204 A0A1B0GW64 132 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 MEX3AA1L020 520 aaKnown RBP18.11■□□□□ 0.49
VPS28-205ENST00000526204 K7N7A8 449 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 HSPA12AO43301 675 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 IL18BPO95998 194 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 FBXW9Q5XUX1 488 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 LINC00518Q8N0U6 118 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 BCL2L2Q92843 193 aaPredicted RBP18.11■□□□□ 0.49
VPS28-205ENST00000526204 SMDT1Q9H4I9 107 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 BIN3Q9NQY0 253 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 OR2W1Q9Y3N9 320 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 TRAV24A0A0B4J272 114 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 COLCA2A8K830 154 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 HS3ST1O14792 307 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 C1QL1O75973 258 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 CRYBA1P05813 215 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 SP9P0CG40 484 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 CD46P15529 392 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 F2RP25116 425 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 HIKESHIQ53FT3 197 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 TMEM182Q6ZP80 229 aaPredicted RBP18.11■□□□□ 0.49
VPS28-205ENST00000526204 OR51I2Q9H344 312 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 GP6Q9HCN6 339 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 IL17BQ9UHF5 180 aa18.11■□□□□ 0.49
VPS28-205ENST00000526204 J3QW42 95 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 HOXA1P49639 335 aaPredicted RBP18.1■□□□□ 0.49
VPS28-205ENST00000526204 HLA-DRB3P79483 266 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 CLINT1Q14677 625 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 FAM213BQ8TBF2 198 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 RDH5Q92781 318 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 ZNF488Q96MN9 340 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 CABLES2Q9BTV7 478 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 PROB1E7EW31 1015 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 J3QT63 122 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 LILRA1O75019 489 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 FOLR2P14207 255 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 ZNF324BQ6AW86 544 aaPredicted RBP18.1■□□□□ 0.49
VPS28-205ENST00000526204 C20orf204Q6ZNR8 217 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 OR8G5Q8NG78 346 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 OR2G3Q8NGZ4 309 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 MAGT1Q9H0U3 335 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 SLC35B3Q9H1N7 401 aa18.1■□□□□ 0.49
VPS28-205ENST00000526204 C12orf49Q9H741 205 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms