RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 HPRT1P00492 218 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 SELEP16581 610 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 P2RY1P47900 373 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 IFITM2Q01629 132 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 PWWP2BQ6NUJ5 590 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 SLC35E3Q7Z769 313 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 MUC15Q8N387 334 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 C11orf40Q8WZ69 217 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 TLNRD1Q9H1K6 362 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 SPANXA1Q9NS26 97 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 A1L4Q6 167 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 NPIPB8E9PQR5 432 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 NRG2O14511 850 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 NPIPB7O75200 414 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 FAHP16930 419 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 AGFG1P52594 562 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 MEF2CQ06413 473 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 OR8B8Q15620 311 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 ZNF628Q5EBL2 1059 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 WDR25Q64LD2 544 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 C12orf73Q69YU5 71 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 SCCPDHQ8NBX0 429 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 BEND2Q8NDZ0 799 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 OR52N5Q8NH56 324 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 CNRIP1Q96F85 164 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 RARRES2Q99969 163 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 TMEM147Q9BVK8 224 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 LYRM4Q9HD34 91 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 TNFSF11O14788 317 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 ACTL6AO96019 429 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 CRYAAP02489 173 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 C21orf58P58505 322 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 RPS16P62249 146 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 SRSF4Q08170 494 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 GAGE2BQ13066 116 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 GAGE2EQ4V326 116 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 EMC4Q5J8M3 183 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 OR4F17Q8NGA8 305 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 CHST6Q9GZX3 395 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 PBOV1Q9GZY1 135 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 C12orf49Q9H741 205 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 KIR3DX1Q9H7L2 352 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 TMEM38BQ9NVV0 291 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 GAGE2DQ9UEU5 116 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 TBC1D29Q9UFV1 150 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 R4GMQ9 66 aa7.74□□□□□ -1.17
LIMCH1-218ENST00000513024 ANKRD20A5PA0PJZ0 165 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 SIRPB1O00241 398 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 CD22P20273 847 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 COL8A1P27658 744 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 SNAI3Q3KNW1 292 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 TMEM52BQ4KMG9 183 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 KIRREL2Q6UWL6 708 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 LIAT1Q6ZQX7 453 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 CAMKMTQ7Z624 323 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 MSRB3Q8IXL7 192 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 OR13H1Q8NG92 308 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 RGP1Q92546 391 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 CNTD2Q9H8S5 307 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 LAMTOR2Q9Y2Q5 125 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 COL11A2P13942 1736 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 ADAM20O43506 726 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 HLA-DQA1P01909 254 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 MMP9P14780 707 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 MFAP2P55001 183 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 LHX8Q68G74 356 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 SLC25A26Q70HW3 274 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 LHFPL4Q7Z7J7 247 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 SLC37A2Q8TED4 501 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 ZNF418Q8TF45 676 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 PATE1Q8WXA2 126 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 CES1P1Q9UKY3 287 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 CYSLTR1Q9Y271 337 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 DLEU1O43261 78 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 CD74P04233 296 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 ZNF141Q15928 474 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 RGS7BPQ6MZT1 257 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 DOLPP1Q86YN1 238 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 RPEQ96AT9 228 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 POM121L2Q96KW2 1035 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 ST3GAL6Q9Y274 331 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 KCNE3Q9Y6H6 103 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 TRAV8-2A0A0B4J237 113 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 LINC01387J3KSC0 135 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 RER1O15258 196 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 SCAND1P57086 179 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 BTG2P78543 158 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 TFF2Q03403 129 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 ZFAND6Q6FIF0 208 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 PTPMT1Q8WUK0 201 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 EDARADDQ8WWZ3 215 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 MOB3AQ96BX8 217 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 PELI1Q96FA3 418 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 PCGF1Q9BSM1 259 aa7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 RSPO3Q9BXY4 272 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-218ENST00000513024 ZFPL1O95159 310 aa7.72□□□□□ -1.17
LIMCH1-218ENST00000513024 HIST1H1BP16401 226 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-218ENST00000513024 FCARP24071 287 aa7.72□□□□□ -1.17
LIMCH1-218ENST00000513024 APOBEC1P41238 236 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-218ENST00000513024 RPL30P62888 115 aaKnown RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms