RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ZNF728P0DKX0 622 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 CD99P14209 185 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 HSPB2Q16082 182 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF658BQ4V348 819 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 LIAT1Q6ZQX7 453 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 G6PC2Q9NQR9 355 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 HCSTQ9UBK5 93 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 TBL2Q9Y4P3 447 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 R4GMQ9 66 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 PLXNA2O75051 1894 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 SHANK1Q9Y566 2161 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 IGHV1-69-2A0A0G2JMI3 117 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 TRAF3IP2O43734 574 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 OPRM1P35372 400 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 SLC11A1P49279 550 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 RHOGP84095 191 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF726P1Q15940 193 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 ACKR1Q16570 336 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 AMZ2Q86W34 360 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 OR5D14Q8NGL3 314 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 LHX4Q969G2 390 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF286AQ9HBT8 521 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 MYOFQ9NZM1 2061 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 WASHC3Q9Y3C0 194 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 A0A0G2JLL6 359 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 APOBEC3AP31941 199 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 CCR2P41597 374 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 RRADP55042 308 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 RELBQ01201 579 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 ABHD12BQ7Z5M8 362 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 PRRT2Q7Z6L0 340 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 OR2A1Q8NGT9 310 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 SGMS2Q8NHU3 365 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 MRPL30Q8TCC3 161 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 OR10A2Q9H208 303 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 TMEM74BQ9NUR3 256 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 TP73-AS1Q9UF72 201 aa10.44□□□□□ -0.74
LIMCH1-213ENST00000511496 IGKV1D-42A0A075B6H8 117 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 A6NJY4 79 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 GJE1A6NN92 205 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 FAM166BA8MTA8 275 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 PRKNO60260 465 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 NPIPB7O75200 414 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 EGR1P18146 543 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 S100GP29377 79 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 OR1D2P34982 312 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 LGALS7P47929 136 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 MEF2BQ02080 365 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 ZIC1Q15915 447 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 ST6GALNAC6Q969X2 333 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 GPX7Q96SL4 187 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 NRN1Q9NPD7 142 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 IGLC7A0M8Q6 106 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 CT62P0C5K7 136 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 RBPJQ06330 500 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 NSDHLQ15738 373 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 MPV17L2Q567V2 206 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 LCN12Q6JVE5 192 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 PRSS57Q6UWY2 283 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 FAM89BQ8N5H3 189 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 OR52N5Q8NH56 324 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 SCGB1C1Q8TD33 95 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 LIME1Q9H400 295 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 MRPS16Q9Y3D3 137 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 CTLA4P16410 223 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 HMGA1P17096 107 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 APOBEC3FQ8IUX4 373 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 Q8N976 141 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 LRRC75AQ8NAA5 344 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF519Q8TB69 540 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 CYB5D2Q8WUJ1 264 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 GATAD1Q8WUU5 269 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 SLC39A9Q9NUM3 307 aa10.43□□□□□ -0.74
LIMCH1-213ENST00000511496 DPRXA6NFQ7 191 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 IGKV1D-16P01601 117 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 LCN2P80188 198 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 PAX2Q02962 417 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 PDGFRLQ15198 375 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 C6orf201Q7Z4U5 140 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 C8orf44Q96CB5 159 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 MMP25Q9NPA2 562 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 ANAPC10Q9UM13 185 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 COA3Q9Y2R0 106 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 TRAV1-1A0A0B4J248 108 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 TMEM50AO95807 157 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 SMAGPQ0VAQ4 97 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 MGAT2Q10469 447 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 KIAA1324LA8MWY0 1029 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 CHST1O43916 411 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF823P16415 610 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 NTF3P20783 257 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF133P52736 654 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 ARF6P62330 175 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 TMEM267Q0VDI3 215 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 TCEA2Q15560 299 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 STXBP6Q8NFX7 210 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 C18orf12Q96KH6 178 aa10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 LINC00615Q96LM1 132 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-213ENST00000511496 PRRT4C9JH25 899 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms