RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 FUT7Q11130 342 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 MYBPHQ13203 477 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 MMDQ15546 238 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 TAL2Q16559 108 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 ACSF3Q4G176 576 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 WIPI1Q5MNZ9 446 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 SLCO4C1Q6ZQN7 724 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 ATP5L2Q7Z4Y8 100 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 MOB3BQ86TA1 216 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 MUC20Q8N307 709 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 OR5C1Q8NGR4 320 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 KLHDC7BQ96G42 594 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 CHAC1Q9BUX1 264 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 RTN4RQ9BZR6 473 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 TXNRD2Q9NNW7 524 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 TMEM106BQ9NUM4 274 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 COA4Q9NYJ1 87 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 DEC1Q9P2X7 70 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 GPR52Q9Y2T5 361 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SERTM1A2A2V5 107 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SH2D7A6NKC9 451 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 TMX2-CTNND1H3BSU7 103 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 HOXA3O43365 443 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 SRSF10O75494 262 aaKnown RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 TUSC2O75896 110 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 WNT11O96014 354 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 CD8AP01732 235 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 EDN1P05305 212 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 TIMP2P16035 220 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SPNP16150 400 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 CD38P28907 300 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 PRDX2P32119 198 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 HRH1P35367 487 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 FUT6P51993 359 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 B4GALNT1Q00973 533 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 MEF2BQ02080 365 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 SP2Q02086 613 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 RBPJQ06330 500 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SOX4Q06945 474 aaPredicted RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 MARCH8Q5T0T0 291 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SAMD5Q5TGI4 173 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 TMEM207Q6UWW9 146 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 CYP2G1PQ6ZSU1 146 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 TAS1R1Q7RTX1 841 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 PPP1R27Q86WC6 154 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 ZNF595Q8IYB9 648 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SELENOHQ8IZQ5 122 aaKnown RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 CMTM8Q8IZV2 173 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 DTX3Q8N9I9 347 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 GLIS3Q8NEA6 775 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 OR52M1Q8NGK5 317 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SGMS2Q8NHU3 365 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 C11orf40Q8WZ69 217 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 ZNF414Q96IQ9 312 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 ATOH8Q96SQ7 321 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 HES7Q9BYE0 225 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 AMBRA1Q9C0C7 1298 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 SFXN1Q9H9B4 322 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 IL36RNQ9UBH0 155 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 PISDQ9UG56 409 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 MRPS17Q9Y2R5 130 aaKnown RBP3.17□□□□□ -1.9
USP53-205ENST00000509769 NEUROG3Q9Y4Z2 214 aa3.17□□□□□ -1.9
USP53-205ENST00000509769 TRBV24-1A0A075B6N3 115 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 C11orf98E9PRG8 122 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 MS4A18H0YCH9 400 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 K7N7A8 449 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 SAP18O00422 153 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 RBP4P02753 201 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 PPBPP02775 128 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TNFRSF1BP20333 461 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 DRD1P21728 446 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 MAGEA5P43359 124 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 KIR3DL2P43630 455 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 IER3P46695 156 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TDGF1P3P51864 188 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 DUSP2Q05923 314 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 KLF9Q13886 244 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 SIX1Q15475 284 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 PRSS8Q16651 343 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 RSPO4Q2I0M5 234 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 MS4A18Q3C1V0 323 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TMEM215Q68D42 235 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ZNF479Q96JC4 524 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 NPFFR1Q9GZQ6 430 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 CHST5Q9GZS9 411 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 MRPS18AQ9NVS2 196 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 TRAV2A0A0B4J234 112 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 RNF225M0QZC1 329 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 SYNGR1O43759 233 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 B4GALT3O60512 393 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 DANCRP0C864 163 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 JMJD7P0C870 316 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 DUTP33316 252 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 ACVRL1P37023 503 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 PHLDA2Q53GA4 152 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 LRRC10Q5BKY1 277 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 XAF1Q6GPH4 301 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 Q6ZPB1 254 aaPredicted RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms