RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 MTCH1Q9NZJ7 389 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 ST8SIA5O15466 376 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 KLF3P57682 345 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 DEFA6Q01524 100 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 TUSC1Q2TAM9 212 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 SAXO1Q8IYX7 474 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 MRGPRDQ8TDS7 321 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 FBXO17Q96EF6 278 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 AP1S3Q96PC3 154 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 TMEM147Q9BVK8 224 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 NIT2Q9NQR4 276 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 IGLV3-32A0A0A0MS00 114 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 MAP1LC3B2A6NCE7 125 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 COX5BP10606 129 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM3AP98173 230 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 FFAR4Q5NUL3 377 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 TMEM251Q8N6I4 163 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 C12orf57Q99622 126 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 MAP1LC3BQ9GZQ8 125 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 CDIPTO14735 213 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 SCGB1D1O95968 90 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 SULT1A2P50226 295 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 PMP22Q01453 160 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 RNF212Q495C1 297 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 C17orf82Q86X59 251 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 LHFPL5Q8TAF8 219 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 VOPP1Q96AW1 172 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 MOB3AQ96BX8 217 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 TIMM8BQ9Y5J9 83 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 CLPSP04118 112 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 MMP9P14780 707 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 SULT1A1P50225 295 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 DPPA3Q6W0C5 159 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 MS4A3Q96HJ5 214 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 POM121L2Q96KW2 1035 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 GFI1Q99684 422 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 FCGR3BO75015 233 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 FABP1P07148 127 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 RNF122Q9H9V4 155 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 COLQQ9Y215 455 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 KCNAB3O43448 404 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 MGST1P10620 155 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 ARSJQ5FYB0 599 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC25A40Q8TBP6 338 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 POM121Q96HA1 1249 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 RTN4RQ9BZR6 473 aa9.34□□□□□ -0.91
LIMCH1-205ENST00000503057 DEFB108AA8MXU0 73 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 HRASP01112 189 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 PDGFBP01127 241 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 ZNF154Q13106 437 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 MRPL14Q6P1L8 145 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 NECAP1Q8NC96 275 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 TM2D1Q9BX74 207 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 MS4A7Q9GZW8 240 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 WNT5BQ9H1J7 359 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 OR6C3Q9NZP0 311 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 OSGIN2Q9Y236 505 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 HKR1P10072 659 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 BTNL8Q6UX41 500 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 FGF11Q92914 225 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 TMEM45BQ96B21 275 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 ABHD14BQ96IU4 210 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 TMEM222Q9H0R3 208 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 ESRP2Q9H6T0 727 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 RPH3ALQ9UNE2 315 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 UNC13CQ8NB66 2214 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 MST1P26927 711 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 BPIFB3P59826 476 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 AWAT1Q58HT5 328 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 C1orf174Q8IYL3 243 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 TIMD4Q96H15 378 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 MRPL13Q9BYD1 178 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 HEATR5BQ9P2D3 2071 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 HSBP1L1C9JCN9 74 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 H0Y980 276 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 RAMP1O60894 148 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 RCC1P18754 421 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 RPS16P62249 146 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 TMPRSS7Q7RTY8 843 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 PPP1R32Q7Z5V6 425 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 SLC25A28Q96A46 364 aa9.33□□□□□ -0.92
LIMCH1-205ENST00000503057 AQP7O14520 342 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 ZNF737O75373 536 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 FGF2P09038 288 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 C1QTNF12Q5T7M4 302 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 RFESDQ8TAC1 157 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 OR10C1Q96KK4 312 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 PIPOXQ9P0Z9 390 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 PNRC1Q12796 327 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 IGSF11Q5DX21 431 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 BAGE3Q86Y29 109 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 BAGE2Q86Y30 109 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 PATZ1Q9HBE1 687 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 TINAGQ9UJW2 476 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 IGHV3-43A0A0B4J1X8 118 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 MED19A0JLT2 244 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 IGHV3-43DP0DP04 118 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 ACP1P24666 158 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 LRRC10Q5BKY1 277 aa9.32□□□□□ -0.92
LIMCH1-205ENST00000503057 PLAC9Q5JTB6 97 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms