RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TMEM210A6NLX4 147 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 NPIPB11E5RHQ5 1161 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 AQP7O14520 342 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 SYNGR1O43759 233 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 MED6O75586 246 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 ATG12O94817 140 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 SEC11BP0C7V7 166 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 MMP9P14780 707 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 RAC2P15153 192 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 ZNF14P17017 642 aaPredicted RBP10.23□□□□□ -0.77
NUP54-202ENST00000502850 KCNJ3P48549 501 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 RAB5CP51148 216 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 PDCD1Q15116 288 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 SPIN3Q5JUX0 258 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 OR2A2Q6IF42 318 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 ZNF880Q6PDB4 577 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 IGFL2Q6UWQ7 119 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 Q6ZPA2 131 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 TBC1D26Q86UD7 250 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 COMMD1Q8N668 190 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 SLC35G3Q8N808 338 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 OR4D5Q8NGN0 318 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 SECTM1Q8WVN6 248 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 TSNAXQ99598 290 aaKnown RBP10.23□□□□□ -0.77
NUP54-202ENST00000502850 CABLES2Q9BTV7 478 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 NKX6-2Q9C056 277 aaPredicted RBP10.23□□□□□ -0.77
NUP54-202ENST00000502850 ZNF629Q9UEG4 869 aaPredicted RBP10.23□□□□□ -0.77
NUP54-202ENST00000502850 RAXQ9Y2V3 346 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 PKD1L2Q7Z442 2459 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 ZZEF1O43149 2961 aa10.23□□□□□ -0.77
NUP54-202ENST00000502850 MED13Q9UHV7 2174 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 H0Y980 276 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 SMPD2O60906 423 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 WNT2P09544 360 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 GNRHRP30968 328 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 PPP1CBP62140 327 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 ZNF273Q14593 569 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 PXDC1Q5TGL8 231 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 OR2T2Q6IF00 324 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 MEX3BQ6ZN04 569 aaKnown RBP10.22□□□□□ -0.77
NUP54-202ENST00000502850 Q6ZT83 130 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 FAM214BQ7L5A3 538 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 OR11L1Q8NGX0 322 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 OR10J5Q8NHC4 309 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 MRPL30Q8TCC3 161 aaKnown RBP10.22□□□□□ -0.77
NUP54-202ENST00000502850 SARAFQ96BY9 339 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 BOD1Q96IK1 185 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 SLC25A31Q9H0C2 315 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 ARV1Q9H2C2 271 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 CARHSP1Q9Y2V2 147 aaKnown RBP10.22□□□□□ -0.77
NUP54-202ENST00000502850 ANKRD11Q6UB99 2663 aaPredicted RBP10.22□□□□□ -0.77
NUP54-202ENST00000502850 ZNF407Q9C0G0 2248 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.22□□□□□ -0.77
NUP54-202ENST00000502850 LOC105371267A0A1B0GV96 52 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 CLEC18AA5D8T8 446 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 TSPAN4O14817 238 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 SCTP09683 121 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 VDAC1P21796 283 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 CA6P23280 308 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 UCP1P25874 307 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 CAV2P51636 162 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 RNFT1Q5M7Z0 435 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 C10orf91Q5T1B1 145 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 ATP1A1-AS1Q5TC04 95 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 C1orf174Q8IYL3 243 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 BATF2Q8N1L9 274 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 CLEC18CQ8NCF0 446 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 OR5D13Q8NGL4 314 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 TP53RKQ96S44 253 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 SEC11CQ9BY50 192 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 CRIM1Q9NZV1 1036 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 STRAPQ9Y3F4 350 aaKnown RBP10.22□□□□□ -0.77
NUP54-202ENST00000502850 DNAJC13O75165 2243 aa10.22□□□□□ -0.77
NUP54-202ENST00000502850 IQCF6A8MYZ5 107 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 F8W036 122 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 SNAPINO95295 136 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 ACAA1P09110 424 aaPredicted RBP10.21□□□□□ -0.78
NUP54-202ENST00000502850 ZNF44P15621 663 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 EIF2S3P41091 472 aaKnown RBP10.21□□□□□ -0.78
NUP54-202ENST00000502850 NKX2-1P43699 371 aaPredicted RBP10.21□□□□□ -0.78
NUP54-202ENST00000502850 ZNF266Q14584 549 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 RTP5Q14D33 572 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 TSC22D1Q15714 1073 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 FAM76BQ5HYJ3 339 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 GAPTQ8N292 157 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 GINS3Q9BRX5 216 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 ADAT1Q9BUB4 502 aaKnown RBP10.21□□□□□ -0.78
NUP54-202ENST00000502850 TREM1Q9NP99 234 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 OBP2BQ9NPH6 170 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 COQ3Q9NZJ6 369 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 LUZP4Q9P127 313 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 RCL1Q9Y2P8 373 aaKnown RBP10.21□□□□□ -0.78
NUP54-202ENST00000502850 OR2W1Q9Y3N9 320 aa10.21□□□□□ -0.78
NUP54-202ENST00000502850 TRAV24A0A0B4J272 114 aa10.2□□□□□ -0.78
NUP54-202ENST00000502850 ABCD4O14678 606 aa10.2□□□□□ -0.78
NUP54-202ENST00000502850 ZNF205O95201 554 aa10.2□□□□□ -0.78
NUP54-202ENST00000502850 SLC25A6P12236 298 aa10.2□□□□□ -0.78
NUP54-202ENST00000502850 RCC1P18754 421 aaPredicted RBP10.2□□□□□ -0.78
NUP54-202ENST00000502850 IGHV1-2P23083 117 aa10.2□□□□□ -0.78
NUP54-202ENST00000502850 VAMP2P63027 116 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms