RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 C17orf107Q6ZR85 190 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 GDPD3Q7L5L3 318 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 TEX29Q8N6K0 151 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 OR4M2Q8NGB6 313 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 OR5D13Q8NGL4 314 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 CYYR1Q96J86 154 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 FAM234AQ9H0X4 552 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 OCEL1Q9H607 264 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 AUNIPQ9H7T9 357 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 CHMP1AQ9HD42 196 aaPredicted RBP11.13□□□□□ -0.63
MSH6-208ENST00000493177 KAAG1Q9UBP8 84 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 AK3Q9UIJ7 227 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 HSF4Q9ULV5 492 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 ZANQ9Y493 2812 aa11.13□□□□□ -0.63
MSH6-208ENST00000493177 MFNGO00587 321 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 MGST3O14880 152 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 ZNF737O75373 536 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 GSTP1P09211 210 aaKnown RBP11.12□□□□□ -0.63
MSH6-208ENST00000493177 WNT2P09544 360 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 PTHLHP12272 177 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 KCNJ3P48549 501 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 EDDM3BP56851 147 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 GNB2P62879 340 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 LCN2P80188 198 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 PITPNAQ00169 270 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 AESQ08117 197 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 RNASE12Q5GAN4 147 aaKnown RBP11.12□□□□□ -0.63
MSH6-208ENST00000493177 KRBOX4Q5JUW0 171 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 OLFML2AQ68BL7 652 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 PYHIN1Q6K0P9 492 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 CCDC190Q86UF4 302 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 OR8H2Q8N162 312 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 FGFRL1Q8N441 504 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 SETD6Q8TBK2 473 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 H1FXQ92522 213 aaKnown RBP11.12□□□□□ -0.63
MSH6-208ENST00000493177 CMSS1Q9BQ75 279 aaKnown RBP11.12□□□□□ -0.63
MSH6-208ENST00000493177 CLN8Q9UBY8 286 aa11.12□□□□□ -0.63
MSH6-208ENST00000493177 ANK3Q12955 4377 aaKnown RBP11.11□□□□□ -0.63
MSH6-208ENST00000493177 NIPBLQ6KC79 2804 aaeCLIP11.11□□□□□ -0.63
MSH6-208ENST00000493177 FUOMA2VDF0 154 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 SERPINE3A8MV23 424 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 F5H0A9 414 aaPredicted RBP11.11□□□□□ -0.63
MSH6-208ENST00000493177 TCF21O43680 179 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 FOXH1O75593 365 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 SEC61A1P61619 476 aaKnown RBP11.11□□□□□ -0.63
MSH6-208ENST00000493177 PNLIPRP3Q17RR3 467 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 ESCO2Q56NI9 601 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 PYDC2Q56P42 97 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 HACD4Q5VWC8 232 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 TPRX1Q8N7U7 411 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 PLPPR1Q8TBJ4 325 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 C15orf40Q8WUR7 153 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 NUDCD2Q8WVJ2 157 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 GCDHQ92947 438 aaPredicted RBP11.11□□□□□ -0.63
MSH6-208ENST00000493177 RABL2AQ9UBK7 228 aaPredicted RBP11.11□□□□□ -0.63
MSH6-208ENST00000493177 ELF5Q9UKW6 265 aaPredicted RBP11.11□□□□□ -0.63
MSH6-208ENST00000493177 RABL2BQ9UNT1 228 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 KCNK7Q9Y2U2 307 aa11.11□□□□□ -0.63
MSH6-208ENST00000493177 MEIKINA0A087WXM9 373 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 TMEM30CPA0ZSE6 113 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 MEIS3P1A6NDR6 274 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 HLA-DQB1P01920 261 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 PRSS3P35030 304 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 NPY4RP50391 375 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 WDR25Q64LD2 544 aaPredicted RBP11.1□□□□□ -0.63
MSH6-208ENST00000493177 LINC00299Q6ZSB3 139 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 TRAPPC6BQ86SZ2 158 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 CCDC107Q8WV48 283 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 S100ZQ8WXG8 99 aa11.1□□□□□ -0.63
MSH6-208ENST00000493177 HDHD3Q9BSH5 251 aaPredicted RBP11.1□□□□□ -0.63
MSH6-208ENST00000493177 SSBP3Q9BWW4 388 aaPredicted RBP11.1□□□□□ -0.63
MSH6-208ENST00000493177 CA11O75493 328 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 CSN2P05814 226 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 ETV6P41212 452 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 GLIPR1P48060 266 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 P2RX3P56373 397 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 SRSF2Q01130 221 aaKnown RBP11.09□□□□□ -0.63
MSH6-208ENST00000493177 ZNF45Q02386 682 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 GUCA2AQ02747 115 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 RSBN1Q5VWQ0 802 aaPredicted RBP11.09□□□□□ -0.63
MSH6-208ENST00000493177 SLC35E4Q6ICL7 350 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 ZNF841Q6ZN19 808 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 ZNF497Q6ZNH5 498 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 BTN2A1Q7KYR7 527 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 FAM185AQ8N0U4 392 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 OR4K15Q8NH41 348 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 SPATA3Q8NHX4 192 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 COQ2Q96H96 371 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 ABHD1Q96SE0 405 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 TSC22D3Q99576 134 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 RIMS4Q9H426 269 aaPredicted RBP11.09□□□□□ -0.63
MSH6-208ENST00000493177 C12orf4Q9NQ89 552 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.09□□□□□ -0.63
MSH6-208ENST00000493177 KIF25Q9UIL4 384 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 TRAPPC2LQ9UL33 140 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 V9GYH0 126 aa11.09□□□□□ -0.63
MSH6-208ENST00000493177 LOC105371242A0A075B767 164 aa11.08□□□□□ -0.64
MSH6-208ENST00000493177 TRAV39A0A0B4J263 110 aa11.08□□□□□ -0.64
MSH6-208ENST00000493177 A0A1W2PQ09 198 aa11.08□□□□□ -0.64
MSH6-208ENST00000493177 ODAMA1E959 279 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms