RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	ARL6IP5	O75915	188 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	C1orf105	O95561	183 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	IGSF6	O95976	241 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	APOC3	P02656	99 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	C1QC	P02747	245 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	CAT	P04040	527 aa	Known RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	UMOD	P07911	640 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	WNT2	P09544	360 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	OR8U9	P0C7N5	309 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	SMIM6	P0DI80	62 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	ADRB3	P13945	408 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	RAB3B	P20337	219 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	F2R	P25116	425 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	S100P	P25815	95 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	VEGFC	P49767	419 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	AKR1D1	P51857	326 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	DSCR9	P59020	149 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	RAB8A	P61006	207 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	RBX1	P62877	108 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	BCL2L1	Q07817	233 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	TWF1	Q12792	350 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	C3AR1	Q16581	482 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	GUCA2B	Q16661	112 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	UBE2NL	Q5JXB2	153 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	MBOAT2	Q6ZWT7	520 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	FAM220A	Q7Z4H9	259 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	NIT1	Q86X76	327 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	SVBP	Q8N300	66 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	C12orf45	Q8N5I9	185 aa	Predicted RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	GPR32P1	Q8NGA4	272 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	OR1S1	Q8NH92	325 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	C8orf46	Q8TAG6	207 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	C2orf15	Q8WU43	125 aa	Known RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	DLX4	Q92988	240 aa	Predicted RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	MRPL24	Q96A35	216 aa	Known RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	SMIM12	Q96EX1	92 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	MED8	Q96G25	268 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	MRPL48	Q96GC5	212 aa	Known RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	NARS2	Q96I59	477 aa	Known RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	ADGRG7	Q96K78	797 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	POM121L2	Q96KW2	1035 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	RNF2	Q99496	336 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	ZNF649	Q9BS31	505 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	CABLES2	Q9BTV7	478 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	DDX31	Q9H8H2	851 aa	Known RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	CACYBP	Q9HB71	228 aa	Known RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	ZNF334	Q9HCZ1	680 aa	Predicted RBP	3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	TAS2R8	Q9NYW2	309 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	CALML5	Q9NZT1	146 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	PILRB	Q9UKJ0	227 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	HHLA2	Q9UM44	414 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	TCF19	Q9Y242	345 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	SLC22A7	Q9Y694	548 aa		3.98	□□□□□ -1.77
RTN4-215	ENST00000491592	DOCK6	Q96HP0	2047 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	KIF26A	Q9ULI4	1882 aa	Predicted RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	SRRM4	A7MD48	611 aa	Known RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592		F5H5P2	479 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	TMEM178B	H3BS89	294 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592		J3QRE1	110 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ARPC5	O15511	151 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	PHF1	O43189	567 aa	Predicted RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	PPIH	O43447	177 aa	Known RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	RDH16	O75452	317 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ATG12	O94817	140 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	NDUFB6	O95139	128 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	CNIH1	O95406	144 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	TYMS	P04818	313 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ATP1B1	P05026	303 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	LINC00271	P0C7V0	271 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	C1GALT1C1L	P0DN25	315 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	FOLR2	P14207	255 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	EDNRA	P25101	427 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	PAX6	P26367	422 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	LOX	P28300	417 aa	Predicted RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	SHC1	P29353	583 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	RPL35	P42766	123 aa	Known RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	SULT1A1	P50225	295 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	SULT1A2	P50226	295 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	CCR6	P51684	374 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	BRWD1-AS2	P59051	145 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	RPL31	P62899	125 aa	Known RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	DEFA5	Q01523	94 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	TAF10	Q12962	218 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	TBC1D28	Q2M2D7	210 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ZNF585B	Q52M93	769 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	OR10J3	Q5JRS4	329 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ZNF660	Q6AZW8	331 aa	Predicted RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	HAGHL	Q6PII5	290 aa	Predicted RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	SLC25A47	Q6Q0C1	308 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	AGTRAP	Q6RW13	159 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ALKAL2	Q6UX46	152 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ASCL5	Q7RTU5	278 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	COMMD6	Q7Z4G1	85 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	CEACAM19	Q7Z692	300 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	C5orf24	Q7Z6I8	188 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	RNF113B	Q8IZP6	322 aa	Known RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ZFP41	Q8N8Y5	198 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	RELL2	Q8NC24	303 aa	Predicted RBP	3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	MORN4	Q8NDC4	146 aa		3.97	□□□□□ -1.77
RTN4-215	ENST00000491592	ZNF740	Q8NDX6	193 aa		3.97	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms