RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 ABCD2Q9UBJ2 740 aa7.11□□□□□ -1.27
COL17A1-207ENST00000488320 ERGIC3Q9Y282 383 aa7.11□□□□□ -1.27
COL17A1-207ENST00000488320 R4GMQ9 66 aa7.11□□□□□ -1.27
COL17A1-207ENST00000488320 KIAA1109Q2LD37 5005 aa7.11□□□□□ -1.27
COL17A1-207ENST00000488320 TRAV41A0A0B4J266 112 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 PRR32B1ATL7 298 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 ZNF736B4DX44 427 aaPredicted RBP7.1□□□□□ -1.27
COL17A1-207ENST00000488320 SLC33A1O00400 549 aaPredicted RBP7.1□□□□□ -1.27
COL17A1-207ENST00000488320 HSPB6O14558 160 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 MAGEB4O15481 346 aaPredicted RBP7.1□□□□□ -1.27
COL17A1-207ENST00000488320 RPP14O95059 124 aaKnown RBP7.1□□□□□ -1.27
COL17A1-207ENST00000488320 IL1AP01583 271 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 IGLV1-40P01703 118 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 IGHV3-11P01762 117 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 HMGN1P05114 100 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 CSN2P05814 226 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 LGALS1P09382 135 aaKnown RBP7.1□□□□□ -1.27
COL17A1-207ENST00000488320 CGB3P0DN86 165 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 CGB7P0DN87 165 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 IL3RAP26951 378 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 ROM1Q03395 351 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 GINS1Q14691 196 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 HACD2Q6Y1H2 254 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 PLEKHG7Q6ZR37 379 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 CHST4Q8NCG5 386 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 OR13A1Q8NGR1 328 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 MRGPRDQ8TDS7 321 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 BARHL1Q9BZE3 327 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 FAM118AQ9NWS6 357 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 MRM2Q9UI43 246 aaKnown RBP7.1□□□□□ -1.27
COL17A1-207ENST00000488320 KIF25Q9UIL4 384 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 MAGEL2Q9UJ55 1249 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 ZNF580Q9UK33 172 aa7.1□□□□□ -1.27
COL17A1-207ENST00000488320 A0A1W2PN81 502 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 ATP6V0E1O15342 81 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 DEDDO75618 318 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 CNIH1O95406 144 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 CHRNA7P36544 502 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 MAGEA2P43356 314 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 PDZK1IP1Q13113 114 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 Q6P435 159 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 ZNF322Q6U7Q0 402 aaPredicted RBP7.09□□□□□ -1.27
COL17A1-207ENST00000488320 YIPF7Q8N8F6 280 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 OR10A7Q8NGE5 316 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 CASTOR1Q8WTX7 329 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 RTN4IP1Q8WWV3 396 aaPredicted RBP7.09□□□□□ -1.27
COL17A1-207ENST00000488320 RFT1Q96AA3 541 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 MNTQ99583 582 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 NIPSNAP1Q9BPW8 284 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 NABP2Q9BQ15 211 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 CHST5Q9GZS9 411 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 COMMD4Q9H0A8 199 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 REEP1Q9H902 201 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 SLC25A19Q9HC21 320 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 NEK6Q9HC98 313 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 SPAG4Q9NPE6 437 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 TPSG1Q9NRR2 321 aa7.09□□□□□ -1.27
COL17A1-207ENST00000488320 SAMHD1Q9Y3Z3 626 aaKnown RBP7.09□□□□□ -1.27
COL17A1-207ENST00000488320 SHISA3A0PJX4 238 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 FAM90A10PA6NDY2 464 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 NUPR2A6NF83 97 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 NPIPB11E5RHQ5 1161 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 ARPC1BO15143 372 aaKnown RBP7.08□□□□□ -1.28
COL17A1-207ENST00000488320 SRSF10O75494 262 aaKnown RBP7.08□□□□□ -1.28
COL17A1-207ENST00000488320 CCL1P22362 96 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 PRKACBP22694 351 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 CXCR4P61073 352 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 RAB40BQ12829 278 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 MMDQ15546 238 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 ECSCRQ19T08 205 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 PAN3Q58A45 887 aaKnown RBP7.08□□□□□ -1.28
COL17A1-207ENST00000488320 Q6ZSR3 168 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 RDH10Q8IZV5 341 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 DNAAF1Q8NEP3 725 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 OR10G2Q8NGC3 310 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 OR51T1Q8NGJ9 327 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 PP6455Q8WZ26 134 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 RGP1Q92546 391 aaPredicted RBP7.08□□□□□ -1.28
COL17A1-207ENST00000488320 NR1H4Q96RI1 486 aaPredicted RBP7.08□□□□□ -1.28
COL17A1-207ENST00000488320 MBOAT4Q96T53 435 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 TEX12Q9BXU0 123 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 PLEKHA3Q9HB20 300 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 FGFR1OP2Q9NVK5 253 aa7.08□□□□□ -1.28
COL17A1-207ENST00000488320 KLK5Q9Y337 293 aaPredicted RBP7.08□□□□□ -1.28
COL17A1-207ENST00000488320 TRAV39A0A0B4J263 110 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 ZNF670-ZNF695F2Z2N8 137 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 H0YJX3 145 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 ARPC2O15144 300 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 CCDC22O60826 627 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 RGS11O94810 467 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 CSTBP04080 98 aaKnown RBP7.07□□□□□ -1.28
COL17A1-207ENST00000488320 ATF1P18846 271 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 SLC2A5P22732 501 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 CD40LGP29965 261 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 SSTR5P35346 364 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 CD300LDQ6UXZ3 194 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 MINDY2Q8NBR6 621 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 TMEM104Q8NE00 496 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 CCDC54Q8NEL0 328 aa7.07□□□□□ -1.28
COL17A1-207ENST00000488320 OR5D18Q8NGL1 313 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms