RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 CPEB3Q8NE35 698 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 MRPL30Q8TCC3 161 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 C1orf147Q96MC9 270 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 HSPB9Q9BQS6 159 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 THAP10Q9P2Z0 257 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 ZFP30Q9Y2G7 519 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 ASCC3Q8N3C0 2202 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 CD300LBA8K4G0 201 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 IGHMP01871 453 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 ARL4DP49703 201 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 GNB2P62879 340 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 ARF1P84077 181 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 MEF2BQ02080 365 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 Q6ZN92 141 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 NUFIP2Q7Z417 695 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 TBC1D26Q86UD7 250 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 MSI2Q96DH6 328 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 SLC35E1Q96K37 410 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 PRO3102Q9H379 93 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 SLC25A22Q9H936 323 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 MSL2Q9HCI7 577 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 FAM60AQ9NP50 221 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 C2orf72A6NCS6 295 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 SHISA7A6NL88 538 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 TNFSF13O75888 250 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 OR7C1O76099 320 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 PFN1P07737 140 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 ZNF16P17020 682 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 DTYMKP23919 212 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 SRP14P37108 136 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 RPL23P62829 140 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 ACTL10Q5JWF8 245 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 FAM89BQ8N5H3 189 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 SIGLECL1Q8N7X8 197 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 LRTM2Q8N967 370 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 OR51G1Q8NGK1 321 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 ELSPBP1Q96BH3 223 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 PINX1Q96BK5 328 aaKnown RBP5.42□□□□□ -1.54
VPS13D-209ENST00000487188 KCNK17Q96T54 332 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 MANBALQ9NQG1 85 aa5.42□□□□□ -1.54
VPS13D-209ENST00000487188 GRIFINA4D1Z8 144 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 B4DGG1 531 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PPYP01298 95 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 CTSBP07858 339 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 UMODP07911 640 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 LMO1P25800 156 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 EFNA3P52797 238 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 UCP3P55916 312 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 MYPOPQ86VE0 399 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-209ENST00000487188 OR5AU1Q8NGC0 362 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PP6455Q8WZ26 134 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 SCARF2Q96GP6 870 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-209ENST00000487188 LRRC3BQ96PB8 259 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 TMEM222Q9H0R3 208 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PARLQ9H300 379 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 MYO9BQ13459 2157 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 TRBV11-1A0A0K0K1C0 115 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 UBE2L5PA0A1B0GUS4 154 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PROB1E7EW31 1015 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 GZMHP20718 246 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 DLX2Q07687 328 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PDCD1Q15116 288 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 CNN3Q15417 329 aaKnown RBP5.41□□□□□ -1.54
VPS13D-209ENST00000487188 VAMP3Q15836 100 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 C2orf27AQ580R0 203 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 ZNF542PQ5EBM4 170 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 BATF2Q8N1L9 274 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 TMEM256Q8N2U0 113 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 OIT3Q8WWZ8 545 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 NAT6Q93015 286 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 MOB3AQ96BX8 217 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 ZNF524Q96C55 264 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 DEFB118Q96PH6 123 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PCED1AQ9H1Q7 454 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 TMEM106BQ9NUM4 274 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PLA2G3Q9NZ20 509 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 ARHGEF17Q96PE2 2063 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-209ENST00000487188 IGKV1-9A0A0C4DH69 117 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 A0A1B0GUS0 222 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 ALG1L2C9J202 215 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 DHRS3O75911 302 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 SERPINA7P05543 415 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 CD33P20138 364 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 VDAC1P21796 283 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 CARD18P57730 90 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PAFAH1B2P68402 229 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 MSMO1Q15800 293 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 OR8G2PQ6IF36 304 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 CRIPAKQ8N1N5 446 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 OR4B1Q8NGF8 309 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 OR51H1Q8NH63 302 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 FLVCR1-AS1Q8TAF5 88 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 NEIL1Q96FI4 390 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-209ENST00000487188 ABHD14BQ96IU4 210 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 TM2D1Q9BX74 207 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 AURKAIP1Q9NWT8 199 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-209ENST00000487188 PSENENQ9NZ42 101 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 KLRF1Q9NZS2 232 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 LHFPL6Q9Y693 200 aa5.41□□□□□ -1.54
VPS13D-209ENST00000487188 TRAV1-1A0A0B4J248 108 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms