RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 RSPO1Q2MKA7 263 aaPredicted RBP11.48□□□□□ -0.57
USP40-214ENST00000483519 SNAI3Q3KNW1 292 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 SLC25A24Q6NUK1 477 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 BRICD5Q6PL45 260 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 CLEC2AQ6UVW9 174 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 WDR5BQ86VZ2 330 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 SELENOHQ8IZQ5 122 aaKnown RBP11.48□□□□□ -0.57
USP40-214ENST00000483519 TMEM123Q8N131 208 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 CARFQ8N187 725 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 CLEC18CQ8NCF0 446 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 OR10A7Q8NGE5 316 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 NDUFAF3Q9BU61 184 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 ACTR3CQ9C0K3 210 aaPredicted RBP11.48□□□□□ -0.57
USP40-214ENST00000483519 LRFN1Q9P244 771 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 GOSR1O95249 250 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 IFNA5P01569 189 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 GZMBP10144 247 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 ZNF154Q13106 437 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 AARDQ4LEZ3 155 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 SPIN3Q5JUX0 258 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 FOXL2NBQ6ZUU3 175 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 C17orf82Q86X59 251 aaPredicted RBP11.47□□□□□ -0.57
USP40-214ENST00000483519 C1orf210Q8IVY1 113 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 BEND2Q8NDZ0 799 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 P2RX4Q99571 388 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 SDF2L1Q9HCN8 221 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 ST3GAL6Q9Y274 331 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 PCDH15Q96QU1 1955 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 UNC80Q8N2C7 3258 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 IGKV1-27A0A075B6S5 117 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 TRBV11-1A0A0K0K1C0 115 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 ZFP92A6NM28 416 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 OR2J2O76002 312 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 TCN2P20062 427 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 ID3Q02535 119 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 ODF3L1Q8IXM7 274 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 NFAM1Q8NET5 270 aaPredicted RBP11.47□□□□□ -0.57
USP40-214ENST00000483519 NABP1Q96AH0 204 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 RALGAPA1Q6GYQ0 2036 aa11.47□□□□□ -0.57
USP40-214ENST00000483519 B9A039 149 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 TCAPO15273 167 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 VDAC1P21796 283 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 GNRHRP30968 328 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 CDCP2Q5VXM1 449 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 ZNF787Q6DD87 383 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 ANKRD37Q7Z713 158 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 ZNF442Q9H7R0 627 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 SRD5A3Q9H8P0 318 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 IL36GQ9NZH8 169 aa11.46□□□□□ -0.57
USP40-214ENST00000483519 NCOA6Q14686 2063 aaPredicted RBP11.46□□□□□ -0.57
USP40-214ENST00000483519 CNOT4O95628 575 aaKnown RBP11.46□□□□□ -0.58
USP40-214ENST00000483519 AMBPP02760 352 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 PTGDSP41222 190 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 DEFB133Q30KQ1 61 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 NMSQ5H8A3 153 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 TGIF2LXQ8IUE1 241 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 OR2M3Q8NG83 312 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 OR1P1Q8NH06 330 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 OR4X1Q8NH49 305 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 OR2V1Q8NHB1 315 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 TMEM54Q969K7 222 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 SIGLEC12Q96PQ1 595 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 NEU1Q99519 415 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 RNF150Q9ULK6 438 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 ZDBF2Q9HCK1 2354 aa11.46□□□□□ -0.58
USP40-214ENST00000483519 CHST1O43916 411 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 TMEM50AO95807 157 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 GCGP01275 180 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 FOXL2P58012 376 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 MPV17LQ2QL34 196 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 PLXDC1Q8IUK5 500 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 OR10G3Q8NGC4 313 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 OR2AE1Q8NHA4 323 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 RBM24Q9BX46 236 aaKnown RBP11.45□□□□□ -0.58
USP40-214ENST00000483519 DHHO43323 396 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 FAM69BQ5VUD6 431 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 LRFN3Q9BTN0 628 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 SLC7A10Q9NS82 523 aa11.45□□□□□ -0.58
USP40-214ENST00000483519 IGKV1-12A0A0C4DH73 117 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 GALR2O43603 387 aaPredicted RBP11.44□□□□□ -0.58
USP40-214ENST00000483519 NRASP01111 189 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 IFNA1P01562 189 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 IGKV1D-12P01611 117 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 TK1P04183 234 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 UCP1P25874 307 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 ZFP36L1Q07352 338 aaKnown RBP11.44□□□□□ -0.58
USP40-214ENST00000483519 PHYHD1Q5SRE7 291 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 ZNF880Q6PDB4 577 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 ZNF664Q8N3J9 261 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 ZNF665Q9H7R5 613 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 RBM11P57052 281 aaKnown RBP11.44□□□□□ -0.58
USP40-214ENST00000483519 OR1D5P58170 312 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 NUTF2P61970 127 aaKnown RBP11.44□□□□□ -0.58
USP40-214ENST00000483519 RSPO4Q2I0M5 234 aaPredicted RBP11.44□□□□□ -0.58
USP40-214ENST00000483519 COA6Q5JTJ3 125 aaKnown RBP11.44□□□□□ -0.58
USP40-214ENST00000483519 SCGB1C1Q8TD33 95 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 CA5BP1Q8WTZ4 195 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 IL22RA2Q969J5 263 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 DDA1Q9BW61 102 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 VAX2Q9UIW0 290 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms