RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 OR13A1Q8NGR1 328 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 SIRPDQ9H106 197 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 ABCG5Q9H222 651 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 PLEKHJ1Q9NW61 149 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 ONECUT1Q9UBC0 465 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 AK3Q9UIJ7 227 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 HSF4Q9ULV5 492 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 MEIKINA0A087WXM9 373 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 A0A0G2JMP0 313 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 A0A0X1KG70 313 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 METTL21EPA6NDL7 271 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 MFNGO00587 321 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 CTDSP2O14595 271 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 MT-ND4P03905 459 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 GLAP06280 429 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 LIPFP07098 398 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 MMP9P14780 707 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 HIST1H1DP16402 221 aaKnown RBP12.15□□□□□ -0.46
COL9A3-209ENST00000469852 ELK1P19419 428 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 CDK2P24941 298 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 KCNJ3P48549 501 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 MEF2CQ06413 473 aaPredicted RBP12.15□□□□□ -0.46
COL9A3-209ENST00000469852 DYNC1I2Q13409 638 aaKnown RBP12.15□□□□□ -0.46
COL9A3-209ENST00000469852 RBM39Q14498 530 aaKnown RBP12.15□□□□□ -0.46
COL9A3-209ENST00000469852 CR1LQ2VPA4 569 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 SLC35E4Q6ICL7 350 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 BTNL3Q6UXE8 466 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 IL17RELQ6ZVW7 336 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 IZUMO1Q8IYV9 350 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 GAPTQ8N292 157 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 OR4M2Q8NGB6 313 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 OR4K15Q8NH41 348 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 MRPL30Q8TCC3 161 aaKnown RBP12.15□□□□□ -0.46
COL9A3-209ENST00000469852 CCDC107Q8WV48 283 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 ACOT12Q8WYK0 555 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 DGCR14Q96DF8 476 aaKnown RBP12.15□□□□□ -0.46
COL9A3-209ENST00000469852 RAB3CQ96E17 227 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 MIXL1Q9H2W2 232 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 NDUFA13Q9P0J0 144 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 KCNS2Q9ULS6 477 aa12.15□□□□□ -0.46
COL9A3-209ENST00000469852 NSD1Q96L73 2696 aaPredicted RBP12.15□□□□□ -0.46
COL9A3-209ENST00000469852 DNHD1Q96M86 4753 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 hADV38S2A0JD32 116 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 TMEM30CPA0ZSE6 113 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 A8MV72 311 aaPredicted RBP12.14□□□□□ -0.47
COL9A3-209ENST00000469852 MMP23AO75900 390 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 SOX6P35712 828 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 GDNFP39905 211 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 GLP1RP43220 463 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 MADCAM1Q13477 382 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 MRGPRDQ8TDS7 321 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 AP3S1Q92572 193 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 TBX15Q96SF7 602 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 C7orf69Q9H7B7 122 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 LINC00312Q9Y6C7 94 aa12.14□□□□□ -0.47
COL9A3-209ENST00000469852 NAPSAO96009 420 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 CGB3P0DN86 165 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 CGB7P0DN87 165 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 PTHLHP12272 177 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 RCC1P18754 421 aaPredicted RBP12.13□□□□□ -0.47
COL9A3-209ENST00000469852 GATA3P23771 443 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 C17orf58Q2M2W7 97 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 ZNF260Q3ZCT1 412 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 CDNFQ49AH0 187 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 BAIAP2L2Q6UXY1 529 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 TRAPPC6BQ86SZ2 158 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 LAX1Q8IWV1 398 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 KIR3DL3Q8N743 410 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 UBALD1Q8TB05 177 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 CORO2AQ92828 525 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 WDFY2Q96P53 400 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 PCGF1Q9BSM1 259 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 NXF2Q9GZY0 626 aaKnown RBP12.13□□□□□ -0.47
COL9A3-209ENST00000469852 SIRT7Q9NRC8 400 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 AUP1Q9Y679 476 aa12.13□□□□□ -0.47
COL9A3-209ENST00000469852 TRAV18A0A075B6X5 111 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 TRGV10A0A0A0MS01 117 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 FUOMA2VDF0 154 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 TMEM235A6NFC5 223 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 C17orf98A8MV24 154 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 H3BUI4 141 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 J3QLI3 93 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 APOA1P02647 267 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 ZNF728P0DKX0 622 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 OMGP23515 440 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 SSTR5P35346 364 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 KLRD1Q13241 179 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 FAM189A2Q15884 450 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 FAM120AOSQ5T036 256 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 UTF1Q5T230 341 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 PRAMEF5Q5TYX0 476 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 MZT2AQ6P582 158 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 VMO1Q7Z5L0 202 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 ZNF714Q96N38 554 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 C6orf62Q9GZU0 229 aaPredicted RBP12.12□□□□□ -0.47
COL9A3-209ENST00000469852 NCOR1P1Q9H4R4 102 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 LPAR3Q9UBY5 353 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 UBE2J1Q9Y385 318 aaPredicted RBP12.12□□□□□ -0.47
COL9A3-209ENST00000469852 KPTNQ9Y664 436 aa12.12□□□□□ -0.47
COL9A3-209ENST00000469852 HIVEP2P31629 2446 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms