RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 ZNF283Q8N7M2 679 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR2G3Q8NGZ4 309 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR6X1Q8NH79 312 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR14L1PQ8NHC6 308 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 RCC1LQ96I51 464 aaKnown RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 PIGQQ9BRB3 760 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 NIPSNAP3BQ9BS92 247 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 LIME1Q9H400 295 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 WDR54Q9H977 334 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 P4HTMQ9NXG6 502 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 ERRFI1Q9UJM3 462 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 RCL1Q9Y2P8 373 aaKnown RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 TEX15Q9BXT5 2789 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF727A8MUV8 499 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 RER1O15258 196 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 DHRS3O75911 302 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 SCAF4O95104 1147 aaKnown RBP8.27□□□□□ -1.09
HDAC3-205ENST00000469550 HBE1P02100 147 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 SOD3P08294 240 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 TMEM225BP0DP42 221 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 ATP6V0CP27449 155 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 RND2P52198 227 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 EFNA3P52797 238 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 ERVFRD-1P60508 538 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 LSM6P62312 80 aaKnown RBP8.27□□□□□ -1.09
HDAC3-205ENST00000469550 SRPXP78539 464 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 ICAM4Q14773 271 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 NSDHLQ15738 373 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 SP6Q3SY56 376 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 TMEM176BQ3YBM2 270 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-205ENST00000469550 NKAIN1Q4KMZ8 207 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 KHDC3LQ587J8 217 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 CDPF1Q6NVV7 123 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 IGFL2Q6UWQ7 119 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 TTLL10Q6ZVT0 673 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 OR52M1Q8NGK5 317 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 OR5D18Q8NGL1 313 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 S100PBPQ96BU1 408 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 GNPNAT1Q96EK6 184 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-205ENST00000469550 PGAM5Q96HS1 289 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 C2orf88Q9BSF0 95 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 GPR61Q9BZJ8 451 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 SLC25A31Q9H0C2 315 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 PLEKHF2Q9H8W4 249 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 PCNX3Q9H6A9 2034 aa8.27□□□□□ -1.09
HDAC3-205ENST00000469550 UTP20O75691 2785 aaKnown RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 PHF3Q92576 2039 aaKnown RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 TRAV1-1A0A0B4J248 108 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 LOC102725191A0A1B0GVB3 256 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 MSTNO14793 375 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 TRAF3IP2O43734 574 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 CLDN1O95832 211 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 TRGC2P03986 189 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 FCGR2AP12318 317 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 SELLP14151 372 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 RAB4BP61018 213 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 PNRC1Q12796 327 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 MFAP5Q13361 173 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 GAMTQ14353 236 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ZNF124Q15973 351 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 HAGHQ16775 308 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ZNF343Q6P1L6 599 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 LILRB2Q8N423 598 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ZADH2Q8N4Q0 377 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 CCDC71LQ8N9Z2 235 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ST6GALNAC3Q8NDV1 305 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 RNF138Q8WVD3 245 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 LYZL4Q96KX0 146 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 MRGPRX4Q96LA9 322 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 SLC2A9Q9NRM0 540 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 AK3Q9UIJ7 227 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 HS3ST3B1Q9Y662 390 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 WSB1Q9Y6I7 421 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 DOCK10Q96BY6 2186 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 RP1L1Q8IWN7 2480 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 TGIF2-C20orf24A0A0A6YYL0 155 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 A0A1B0GV90 55 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 A0A1B0GX78 115 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ZNF726A6NNF4 738 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ZNF850A8MQ14 1090 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 H0YL77 283 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 CYB5BO43169 146 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 MMP9P14780 707 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ANOS1P23352 680 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 MSX1P28360 303 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 HLA-DRB3P79483 266 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 FOXF1Q12946 379 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 C1orf189Q5VU69 101 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 OR2T2Q6IF00 324 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 FAM185AQ8N0U4 392 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 CISD2Q8N5K1 135 aaKnown RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 CLDND2Q8NHS1 167 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 PRR7Q8TB68 274 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ABHD5Q8WTS1 349 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 RELTQ969Z4 430 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 MOB3AQ96BX8 217 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 SDHAF3Q9NRP4 125 aa8.26□□□□□ -1.09
HDAC3-205ENST00000469550 FOXD3Q9UJU5 478 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-205ENST00000469550 NXT1Q9UKK6 140 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms