RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 FAM90A10PA6NDY2 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A18PA6NE21 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A16PA6NEW6 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A20PA6NIJ5 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A8PA6NJQ4 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A7PA6NKC0 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 IFITM5A6NNB3 132 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A22PA8MWA6 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 TMEM14DPA8MWL7 114 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A12PA8MX19 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A5PA8MXJ8 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A23PA8MXZ1 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 AIREO43918 545 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 MPIG6BO95866 241 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 IGHV1-69P01742 117 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A15PP0C7V4 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A13PP0C7W8 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A14PP0C7W9 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM90A24PP0C7X0 464 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 ERP29P30040 261 aaKnown RBP9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 EDDM3BP56851 147 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 QRFPP83859 136 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 EDDM3AQ14507 147 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 P2RY14Q15391 338 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 PAN3Q58A45 887 aaKnown RBP9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 HES5Q5TA89 166 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 TMEM200BQ69YZ2 307 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 C11orf87Q6NUJ2 197 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 OR2W3Q7Z3T1 314 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 NR2C2APQ86WQ0 139 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 CMTM4Q8IZR5 234 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 OR4M1Q8NGD0 313 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 OR13F1Q8NGS4 319 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 KCNG3Q8TAE7 436 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 Q96M66 194 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 WWC2-AS2Q96NR7 200 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 FUNDC2Q9BWH2 189 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 SELENOIQ9C0D9 397 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 KCNK15Q9H427 330 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 RNF167Q9H6Y7 350 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 ZNF581Q9P0T4 197 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 STEAP1Q9UHE8 339 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 POMT1Q9Y6A1 747 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 KIAA2026Q5HYC2 2103 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 A0A1W2PPH5 198 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 FUOMA2VDF0 154 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 M0R1W7 72 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 AIPO00170 330 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 HSPB6O14558 160 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 ARSBP15848 533 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 SDC2P34741 201 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 ALDH3B2P48448 385 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 KCNJ3P48549 501 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 P2RX3P56373 397 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 CLDN12P56749 244 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 PAX5Q02548 391 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 MEF2CQ06413 473 aaPredicted RBP9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 UNC119Q13432 240 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 BLMHQ13867 455 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 ZNF273Q14593 569 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 ATXN7L3Q14CW9 347 aaPredicted RBP9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 OR10K2Q6IF99 312 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 METAP1DQ6UB28 335 aaPredicted RBP9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 C1orf122Q6ZSJ8 110 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 TCF23Q7RTU1 214 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 TMEM86BQ8N661 226 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 TPRX1Q8N7U7 411 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 SUMF2Q8NBJ7 301 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 OR51D1Q8NGF3 324 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 LHX4Q969G2 390 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM3DQ96BQ1 224 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 DPCDQ9BVM2 203 aaPredicted RBP9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 TMEM59Q9BXS4 323 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 SPACA1Q9HBV2 294 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 NECAP2Q9NVZ3 263 aa9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 RCC2Q9P258 522 aaKnown RBP9.7□□□□□ -0.86
SQSTM1-206ENST00000466342 hADV38S2A0JD32 116 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 SMIM30A4D0T7 59 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 NOTOA8MTQ0 251 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 TFAP2AP05549 437 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 MELTFP08582 738 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 CCL3L1P16619 93 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 RPS27AP62979 156 aaKnown RBP9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 AESQ08117 197 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 C2orf76Q3KRA6 126 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 KRBOX4Q5JUW0 171 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 ATAD3CQ5T2N8 411 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 VMO1Q7Z5L0 202 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 Q8N7P7 452 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 SSMEM1Q8WWF3 244 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 DYRK2Q92630 601 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 COQ2Q96H96 371 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 TM2D1Q9BX74 207 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 AURKAIP1Q9NWT8 199 aaPredicted RBP9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 FBLN5Q9UBX5 448 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 LINC00312Q9Y6C7 94 aa9.69□□□□□ -0.86
SQSTM1-206ENST00000466342 TMEM272A0A1B0GTI8 110 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 hCG_1809904A0A1W2PP81 198 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 A0A1W2PPE2 198 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 A0A1W2PR64 198 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms