RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ZNF880Q6PDB4 577 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 BCL2L2Q92843 193 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 RCC1P18754 421 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 NXPH1P58417 271 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 PRSS53Q2L4Q9 553 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 STUMQ69YW2 141 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 OR4A4PQ8NGN8 299 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 KCNK7Q9Y2U2 307 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 CDK2AP1O14519 115 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 SERF2P84101 59 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 SSPNQ14714 243 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 AQP3Q92482 292 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 OR10C1Q96KK4 312 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 OR2W1Q9Y3N9 320 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 IGHV1OR15-9A0A0B4J2B8 117 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 UPK3AO75631 287 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 HOXA6P31267 233 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 RPP25Q9BUL9 199 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 CRISPLD2Q9H0B8 497 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 TECRQ9NZ01 308 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 MCM3APO60318 1980 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 TMEM50BP56557 158 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 Q6ZN92 141 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 RCC2Q9P258 522 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 OR5D13Q8NGL4 314 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 A0A0U1RQV5 110 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 IGKV1D-16P01601 117 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 TRIP6Q15654 476 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 HLA-DRB5Q30154 266 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 D2HGDHQ8N465 521 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 DTD1Q8TEA8 209 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 HSPB1P04792 205 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 TMEM52Q8NDY8 209 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 GSX1Q9H4S2 264 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 CCL28Q9NRJ3 127 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 FUT9Q9Y231 359 aa16.66■□□□□ 0.26
CCDC88B-204ENST00000463837 OOEPA6NGQ2 149 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 CELA2BP08218 269 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 TMEM92Q6UXU6 159 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 OR4S2Q8NH73 311 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 OR51M1Q9H341 326 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 LHX9Q9NQ69 397 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 OR5AC2Q9NZP5 309 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 IGKV1-8A0A0C4DH67 115 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 K7EQS6 105 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 RPLP1P05386 114 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 OR3A1P47881 315 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 ELOBQ15370 118 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 LRP11Q86VZ4 500 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 OR5AU1Q8NGC0 362 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 CYB5R3P00387 301 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 BCL2P10415 239 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 CCL2P13500 99 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 LRRC37AA6NMS7 1700 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 SLC25A5P05141 298 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 ZNF25P17030 456 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 TEX30Q5JUR7 227 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 CXXC4Q9H2H0 198 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 R4GN57 208 aa16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 RBBP6Q7Z6E9 1792 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-204ENST00000463837 ACAA1P09110 424 aaPredicted RBP16.64■□□□□ 0.26
CCDC88B-204ENST00000463837 FCARP24071 287 aa16.64■□□□□ 0.26
CCDC88B-204ENST00000463837 ACER2Q5QJU3 275 aa16.64■□□□□ 0.26
CCDC88B-204ENST00000463837 TMEM230Q96A57 120 aa16.64■□□□□ 0.26
CCDC88B-204ENST00000463837 RASL10BQ96S79 203 aa16.64■□□□□ 0.26
CCDC88B-204ENST00000463837 ZNF831Q5JPB2 1677 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 PTPRFP10586 1907 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 OR2M5A3KFT3 312 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 BMPR1BO00238 502 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 H2BFSP57053 126 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 WDR74Q6RFH5 385 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 LDLRAD3Q86YD5 345 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 SLC2A8Q9NY64 477 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 KNTC1P50748 2209 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 IGHV3-43A0A0B4J1X8 118 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 IGHV3-43DP0DP04 118 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 PNLIPP16233 465 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 AAMDCQ9H7C9 122 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 HSF4Q9ULV5 492 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 A0A1W2PR80 420 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 PIN1P1O15428 100 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 MGAT2Q10469 447 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 MRPL30Q8TCC3 161 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 WFDC6Q9BQY6 131 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 LPAR5Q9H1C0 372 aa16.64■□□□□ 0.25
CCDC88B-204ENST00000463837 OR2J3O76001 311 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 CD8AP01732 235 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 CD74P04233 296 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 CAMPP49913 170 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 FDX2Q6P4F2 183 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 R3HDM4Q96D70 268 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 OR2H1Q9GZK4 316 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 OR6C3Q9NZP0 311 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 CXorf65A6NEN9 183 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 SP1P08047 785 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 BCL3P20749 454 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 DTX4Q9Y2E6 619 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 GOLT1BQ9Y3E0 138 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 SHANK3Q9BYB0 1731 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 FOXS1O43638 330 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms