RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 LINC00596Q86U02 117 aa10.28□□□□□ -0.76
PRPF40A-203ENST00000448428 RTN4RL2Q86UN3 420 aa10.28□□□□□ -0.76
PRPF40A-203ENST00000448428 OR4P4Q8NGL7 312 aa10.28□□□□□ -0.76
PRPF40A-203ENST00000448428 NDNFQ8TB73 568 aa10.28□□□□□ -0.76
PRPF40A-203ENST00000448428 CCDC90BQ9GZT6 254 aa10.28□□□□□ -0.76
PRPF40A-203ENST00000448428 BANF2Q9H503 90 aa10.28□□□□□ -0.76
PRPF40A-203ENST00000448428 ZNF286AQ9HBT8 521 aa10.28□□□□□ -0.76
PRPF40A-203ENST00000448428 FBN3Q75N90 2809 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 A0A087X0M5 115 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 A0A1B0GX30 115 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 SC5DO75845 299 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 IGLV1-47P01700 117 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 HSMCR30P0CW71 290 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 SRMP19623 302 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 GLP1RP43220 463 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 MAP2K4P45985 399 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 DYNLT3P51808 116 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 TPBGQ13641 420 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 ATAD3CQ5T2N8 411 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 LRRTM1Q86UE6 522 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 NKAIN3Q8N8D7 197 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 TMEM104Q8NE00 496 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 RFESDQ8TAC1 157 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 ZNF596Q8TC21 504 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 MRGPRDQ8TDS7 321 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 TMEM203Q969S6 136 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 MRPS24Q96EL2 167 aaKnown RBP10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 KIRREL1Q96J84 757 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 UQCC2Q9BRT2 126 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 ZNF696Q9H7X3 374 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 LINC00574Q9H8X3 128 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 TCF7L1Q9HCS4 588 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 ISYNA1Q9NPH2 558 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 ABCB10Q9NRK6 738 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 CALYQ9NYX4 217 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 DPM3Q9P2X0 92 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 FBLN5Q9UBX5 448 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 RAB26Q9ULW5 256 aa10.27□□□□□ -0.77
PRPF40A-203ENST00000448428 ANK2Q01484 3957 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 A6NDX4 124 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 NPIPB11E5RHQ5 1161 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 TOR1AO14656 332 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 MGMTP16455 207 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 NFYBP25208 207 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 VHLP40337 213 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 KIR2DS4P43632 304 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 PRRX1P54821 245 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 RBM48Q5RL73 367 aaKnown RBP10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 PRR31Q5SQ13 230 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 TMEM91Q6ZNR0 172 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 LIAT1Q6ZQX7 453 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 TMEM219Q86XT9 240 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 PHYHIPQ92561 330 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 UFD1Q92890 307 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 CITED1Q99966 193 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 SELENOIQ9C0D9 397 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 RAB18Q9NP72 206 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 IDI2-AS1Q9NZ38 188 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 TCF19Q9Y242 345 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 SIGLEC9Q9Y336 463 aa10.26□□□□□ -0.77
PRPF40A-203ENST00000448428 TMEM30CPA0ZSE6 113 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 FAM90A22PA8MWA6 464 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 LEUTXA8MZ59 168 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 LY6LH3BQJ8 138 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 BUB1B-PAK6H3BSN5 160 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 CRTAPO75718 401 aaPredicted RBP10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 IL1AP01583 271 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 IGHV3-7P01780 117 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 MT-ND4P03905 459 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 UCHL1P09936 223 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 CD37P11049 281 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 CPEP16870 476 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 GZMHP20718 246 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 GABRA5P31644 462 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 SSTR5P35346 364 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 RPS25P62851 125 aaKnown RBP10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 MLLT11Q13015 90 aaPredicted RBP10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 LTC4SQ16873 150 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 HLA-DRB5Q30154 266 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 HSD17B12Q53GQ0 312 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 C1orf100Q5SVJ3 147 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 ZNF497Q6ZNH5 498 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 OR4C13Q8NGP0 309 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 NEK7Q8TDX7 302 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 CCDC107Q8WV48 283 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 LEAP2Q969E1 77 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 MGLLQ99685 303 aa10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 RCC2Q9P258 522 aaKnown RBP10.25□□□□□ -0.77
PRPF40A-203ENST00000448428 MCRIP1C9JLW8 97 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 C15orf65H3BRN8 121 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 J3QR06 171 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 F2RL2O00254 374 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 CD24P25063 80 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 RBM39Q14498 530 aaKnown RBP10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 GLT8D1Q68CQ7 371 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 SIGIRRQ6IA17 410 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 OR10K2Q6IF99 312 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 RAB12Q6IQ22 244 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 OR10A7Q8NGE5 316 aa10.24□□□□□ -0.77
PRPF40A-203ENST00000448428 OR9G1Q8NH87 305 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms