RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TMEM59Q9BXS4 323 aa15.18■□□□□ 0.02
SHH-204ENST00000441114 TMEM133Q9H2Q1 129 aa15.18■□□□□ 0.02
SHH-204ENST00000441114 ZMAT3Q9HA38 289 aaKnown RBP15.18■□□□□ 0.02
SHH-204ENST00000441114 SPACA1Q9HBV2 294 aa15.18■□□□□ 0.02
SHH-204ENST00000441114 STUB1Q9UNE7 303 aa15.18■□□□□ 0.02
SHH-204ENST00000441114 TMEM30CPA0ZSE6 113 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 UBE2QL1A1L167 161 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 BPNT1O95861 308 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 RNASE1P07998 156 aaKnown RBP15.17■□□□□ 0.02
SHH-204ENST00000441114 ARSBP15848 533 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 NFYBP25208 207 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 IER3P46695 156 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 OR10A3P58181 314 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 RBM39Q14498 530 aaKnown RBP15.17■□□□□ 0.02
SHH-204ENST00000441114 NKAPLQ5M9Q1 402 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 SYT6Q5T7P8 510 aaPredicted RBP15.17■□□□□ 0.02
SHH-204ENST00000441114 HEPN1Q6WQI6 88 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 OR51D1Q8NGF3 324 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 RFESDQ8TAC1 157 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 SSMEM1Q8WWF3 244 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 TAF15Q92804 592 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHH-204ENST00000441114 GCDHQ92947 438 aaPredicted RBP15.17■□□□□ 0.02
SHH-204ENST00000441114 OR51E2Q9H255 320 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 TXNL4BQ9NX01 149 aaKnown RBP15.17■□□□□ 0.02
SHH-204ENST00000441114 ETAA1Q9NY74 926 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 CALYQ9NYX4 217 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 ZNRD1Q9P1U0 126 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 SSR3Q9UNL2 185 aa15.17■□□□□ 0.02
SHH-204ENST00000441114 A0A087WXM4 84 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 IGHV2-26A0A0B4J1V2 119 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 TRAV1-2A0A0B4J238 106 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 KBTBD11-OT1A0A1B0GTJ5 212 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 SMIM30A4D0T7 59 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A10PA6NDY2 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A18PA6NE21 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A16PA6NEW6 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A20PA6NIJ5 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A8PA6NJQ4 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A7PA6NKC0 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A22PA8MWA6 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A12PA8MX19 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A5PA8MXJ8 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A23PA8MXZ1 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 CLDN34H7C241 214 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A15PP0C7V4 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A13PP0C7W8 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A14PP0C7W9 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FAM90A24PP0C7X0 464 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 RAB3BP20337 219 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 FUT3P21217 361 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 PSMD7P51665 324 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 RPS27AP62979 156 aaKnown RBP15.16■□□□□ 0.02
SHH-204ENST00000441114 UNC119Q13432 240 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 PLA1AQ53H76 456 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 SIGIRRQ6IA17 410 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 OR52W1Q6IF63 320 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 C16orf87Q6PH81 154 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 LDLRAD3Q86YD5 345 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 ABHD12Q8N2K0 398 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 OR11H6Q8NGC7 330 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 DYRK2Q92630 601 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 NICN1Q9BSH3 213 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 CLEC7AQ9BXN2 247 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 CHIAQ9BZP6 476 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 DPAGT1Q9H3H5 408 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 NCOR1P1Q9H4R4 102 aa15.16■□□□□ 0.02
SHH-204ENST00000441114 RCC2Q9P258 522 aaKnown RBP15.16■□□□□ 0.02
SHH-204ENST00000441114 TMEM14DPA8MWL7 114 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 AIPO00170 330 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 CGB3P0DN86 165 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 CGB7P0DN87 165 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 CD36P16671 472 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 GALP22466 123 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 QRFPP83859 136 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 C2orf76Q3KRA6 126 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 ZNF626Q68DY1 528 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 BEND2Q8NDZ0 799 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 OR4K15Q8NH41 348 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 UBALD1Q8TB05 177 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 NDNFQ8TB73 568 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 FAM3DQ96BQ1 224 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 AJUBAQ96IF1 538 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 NEDD4LQ96PU5 975 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 CHCHD6Q9BRQ6 235 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 IDI2-AS1Q9NZ38 188 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 POMT1Q9Y6A1 747 aa15.15■□□□□ 0.02
SHH-204ENST00000441114 LOC100506127A0A0U1RQW1 187 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 BTBD17A6NE02 478 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 ODF3BA8MYP8 253 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 PDCD6O75340 191 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 IGHV3-7P01780 117 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 MT-ND4P03905 459 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 GADD45AP24522 165 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 SSTR5P35346 364 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 PAX5Q02548 391 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 ZNF497Q6ZNH5 498 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 OR2W3Q7Z3T1 314 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 TMEM86BQ8N661 226 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 SPATA3Q8NHX4 192 aa15.14■□□□□ 0.01
SHH-204ENST00000441114 SSX3Q99909 188 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms