RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GABRA2P47869 451 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 INPP1P49441 399 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 CEBPDP49716 269 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-208ENST00000437607 BTG1P62324 171 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 ARFRP1Q13795 201 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 RBM39Q14498 530 aaKnown RBP10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PDCD1Q15116 288 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PNLIPRP3Q17RR3 467 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 CDNFQ49AH0 187 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 KLF17Q5JT82 389 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PLAC9Q5JTB6 97 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 FAM201AQ5SY85 155 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 TEX36Q5VZQ5 186 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 STUMQ69YW2 141 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 SFRP4Q6FHJ7 346 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-208ENST00000437607 C6orf201Q7Z4U5 140 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 Q8N402 240 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 SIGLECL1Q8N7X8 197 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 C19orf18Q8NEA5 215 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 DEFB108BQ8NET1 73 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PPP1R35Q8TAP8 253 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 SMIM4Q8WVI0 70 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 SEH1LQ96EE3 360 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 IFT22Q9H7X7 185 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 SCPEP1Q9HB40 452 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 IFT46Q9NQC8 304 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 MMP26Q9NRE1 261 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 HSF4Q9ULV5 492 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 WNK1Q9H4A3 2382 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 GABARAPH6UMI1 98 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 CTDSPLO15194 276 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 IGHV2-70P01814 119 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 LPLP06858 475 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 MDH2P40926 338 aaKnown RBP10.05□□□□□ -0.8
PTPRF-208ENST00000437607 PPP5CP53041 499 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 ACTBP60709 375 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 COL10A1Q03692 680 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF260Q3ZCT1 412 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 SIGIRRQ6IA17 410 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 C16orf87Q6PH81 154 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 TRAPPC6BQ86SZ2 158 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 BCL6BQ8N143 479 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-208ENST00000437607 OR8H2Q8N162 312 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 MUC20Q8N307 709 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-208ENST00000437607 SUMF2Q8NBJ7 301 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 NUDCD2Q8WVJ2 157 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF48Q96MX3 618 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-208ENST00000437607 DUX5Q96PT3 197 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 SOSTQ9BQB4 213 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 DPCDQ9BVM2 203 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-208ENST00000437607 PPA2Q9H2U2 334 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 CHMP1AQ9HD42 196 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-208ENST00000437607 C12orf4Q9NQ89 552 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.05□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF581Q9P0T4 197 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF69Q9UC07 566 aa10.05□□□□□ -0.8
PTPRF-208ENST00000437607 IGKV1D-17A0A075B6S4 117 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 PPIAL4CA0A0B4J2A2 164 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 UBE2QL1A1L167 161 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 DNAJC9-AS1A6NH13 148 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 SULT1C2O00338 296 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 SLC33A1O00400 549 aaPredicted RBP10.04□□□□□ -0.8
PTPRF-208ENST00000437607 GSTZ1O43708 216 aaPredicted RBP10.04□□□□□ -0.8
PTPRF-208ENST00000437607 CA11O75493 328 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 GYPAP02724 150 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 GLAP06280 429 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 PTHLHP12272 177 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 FPR2P25090 351 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 PRDX2P32119 198 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 CBX5P45973 191 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 KCNJ3P48549 501 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 TMEM50BP56557 158 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 SEC61A1P61619 476 aaKnown RBP10.04□□□□□ -0.8
PTPRF-208ENST00000437607 DGCR2P98153 550 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 FOXL1Q12952 345 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 ATXN7L3Q14CW9 347 aaPredicted RBP10.04□□□□□ -0.8
PTPRF-208ENST00000437607 HACD4Q5VWC8 232 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 Q6P435 159 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 SHISA2Q6UWI4 295 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 SLC36A1Q7Z2H8 476 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 RTN4RL2Q86UN3 420 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 TMEM185AQ8NFB2 350 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 OR5T2Q8NGG2 359 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 ANGPTL6Q8NI99 470 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 FCAMRQ8WWV6 532 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 ST8SIA4Q92187 359 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 TAF15Q92804 592 aaKnown RBP eCLIP10.04□□□□□ -0.8
PTPRF-208ENST00000437607 ABHD1Q96SE0 405 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 CMSS1Q9BQ75 279 aaKnown RBP10.04□□□□□ -0.8
PTPRF-208ENST00000437607 SULT4A1Q9BR01 284 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 DNTTIP1Q9H147 329 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 ETAA1Q9NY74 926 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 AK3Q9UIJ7 227 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF222Q9UK12 451 aa10.04□□□□□ -0.8
PTPRF-208ENST00000437607 POLR3KQ9Y2Y1 108 aaPredicted RBP10.04□□□□□ -0.8
PTPRF-208ENST00000437607 TRAV24A0A0B4J272 114 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 SIGLEC5O15389 551 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 NDUFA2O43678 99 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 HLA-DQB1P01920 261 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 PRTN3P24158 256 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms