RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TRAV24A0A0B4J272 114 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 E9PI62 339 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 ZFPL1O95159 310 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 REG1BP48304 166 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 ALDH3A2P51648 485 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 GBX2P52951 348 aaPredicted RBP11.5□□□□□ -0.57
SDC1-204ENST00000429035 IL13RA2Q14627 380 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 SLC35E3Q7Z769 313 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 MOB3BQ86TA1 216 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 MRPL41Q8IXM3 137 aaKnown RBP11.5□□□□□ -0.57
SDC1-204ENST00000429035 SYS1Q8N2H4 156 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 OR51A2Q8NGJ7 313 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 UBALD1Q8TB05 177 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 CHPT1Q8WUD6 406 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 BARHL1Q9BZE3 327 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 FAM118AQ9NWS6 357 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 PSG11Q9UQ72 335 aa11.5□□□□□ -0.57
SDC1-204ENST00000429035 IGHV3-72A0A0B4J1Y9 119 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 HSD17B6O14756 317 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 FADS2O95864 444 aaKnown RBP11.49□□□□□ -0.57
SDC1-204ENST00000429035 RPSAP08865 295 aaKnown RBP11.49□□□□□ -0.57
SDC1-204ENST00000429035 RAB7AP51149 207 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 SLC35B1P78383 322 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 RSBN1Q5VWQ0 802 aaPredicted RBP11.49□□□□□ -0.57
SDC1-204ENST00000429035 OR2W3Q7Z3T1 314 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 FOXRED2Q8IWF2 684 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 OR8H3Q8N146 312 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 CBR4Q8N4T8 237 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 PARP16Q8N5Y8 322 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 PXT1Q8NFP0 134 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 HAVCR2Q8TDQ0 301 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 NEK7Q8TDX7 302 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 DUX3Q96PT4 197 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 ERVK13-1Q9NX77 482 aa11.49□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A18PA6NE21 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A16PA6NEW6 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A20PA6NIJ5 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A9PA6NNJ1 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 NCBP2LA6PVI3 153 aaKnown RBP11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A12PA8MX19 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A5PA8MXJ8 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 OR7C1O76099 320 aaPredicted RBP11.48□□□□□ -0.57
SDC1-204ENST00000429035 CDRT1O95170 752 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A15PP0C7V4 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A13PP0C7W8 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A14PP0C7W9 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 FAM90A24PP0C7X0 464 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 SERPINA2P20848 420 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 THBS3P49746 956 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 SLC25A30Q5SVS4 291 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 THNSL2Q86YJ6 484 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 DPCDQ9BVM2 203 aaPredicted RBP11.48□□□□□ -0.57
SDC1-204ENST00000429035 ZNF581Q9P0T4 197 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 ING4Q9UNL4 249 aa11.48□□□□□ -0.57
SDC1-204ENST00000429035 IGHV3-43A0A0B4J1X8 118 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 CCRL2O00421 344 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 FGF16O43320 207 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 CSTBP04080 98 aaKnown RBP11.47□□□□□ -0.57
SDC1-204ENST00000429035 CD2P06729 351 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 IGHV3-43DP0DP04 118 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 KCNJ3P48549 501 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 GTF2A1P52655 376 aaPredicted RBP11.47□□□□□ -0.57
SDC1-204ENST00000429035 PPP3R1P63098 170 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 MRPL28Q13084 256 aaKnown RBP11.47□□□□□ -0.57
SDC1-204ENST00000429035 ATAD3CQ5T2N8 411 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 DDI2Q5TDH0 399 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 ELP2Q6IA86 826 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 SUMF2Q8NBJ7 301 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 OR52I1Q8NGK6 324 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 CCDC107Q8WV48 283 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 Q96MT0 163 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 S100A13Q99584 98 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 JAM3Q9BX67 310 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 METTL9Q9H1A3 318 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 ST3GAL6Q9Y274 331 aa11.47□□□□□ -0.57
SDC1-204ENST00000429035 TMEM30CPA0ZSE6 113 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 SDCBPO00560 298 aaPredicted RBP11.46□□□□□ -0.57
SDC1-204ENST00000429035 CGB3P0DN86 165 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 CGB7P0DN87 165 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 GABRB1P18505 474 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 EGFEM1PQ0D2K5 195 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 UNQ9370/PRO34162Q6UXP9 181 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 STPG2Q8N412 459 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 GPR148Q8TDV2 347 aa11.46□□□□□ -0.57
SDC1-204ENST00000429035 RGP1Q92546 391 aaPredicted RBP11.46□□□□□ -0.57
SDC1-204ENST00000429035 MCRIP2Q9BUT9 160 aaKnown RBP11.46□□□□□ -0.57
SDC1-204ENST00000429035 IGHV1-3A0A0C4DH29 117 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 NPIPB11E5RHQ5 1161 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 H3BNX3 289 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 MPZL2O60487 215 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 GAPDHP04406 335 aaKnown RBP11.45□□□□□ -0.58
SDC1-204ENST00000429035 IL3RAP26951 378 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 MYCNOSP40205 109 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 RBM11P57052 281 aaKnown RBP11.45□□□□□ -0.58
SDC1-204ENST00000429035 RAB40BQ12829 278 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 DEFB136Q30KP8 78 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 ZFP1Q6P2D0 407 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 LCNL1Q6ZST4 164 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 ZNF695Q8IW36 515 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 TFAP2CQ92754 450 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms