RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZDHHC8Q9ULC8 765 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 MAP1LC3B2A6NCE7 125 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 RGS13O14921 159 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PPM1DO15297 605 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 NDUFA2O43678 99 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PPP1R17O96001 155 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 MYF5P13349 255 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 MMDQ15546 238 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 RHBDD2Q6NTF9 364 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 DLEU7Q6UYE1 221 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ERASQ7Z444 233 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 C20orf27Q9GZN8 174 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 MAP1LC3BQ9GZQ8 125 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 RAXQ9Y2V3 346 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1W2PRD5 423 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1W2PRF3 423 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1W2PRM7 423 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF324O75467 553 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PDLIM4P50479 330 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 CLLU1Q5K131 121 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 CELF2-AS1Q8N7Q2 184 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 OR4X1Q8NH49 305 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ISG20L2Q9H9L3 353 aaKnown RBP6.06□□□□□ -1.44
SCN1A-204ENST00000423058 LPAR2Q9HBW0 351 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 LIPGQ9Y5X9 500 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 MC5RP33032 325 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 GFRA1P56159 465 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 RPL31P62899 125 aaKnown RBP6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF738Q8NE65 137 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 JMJD8Q96S16 334 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ABHD14AQ9BUJ0 271 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 TOLLIPQ9H0E2 274 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM56-RWDD3S4R434 201 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ADAMTSL3P82987 1691 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV3-43A0A0B4J1X8 118 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1W2PNV4 684 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 C7orf72A4D263 438 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 GAPDHP04406 335 aaKnown RBP6.06□□□□□ -1.44
SCN1A-204ENST00000423058 SFTA3P0C7M3 94 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV3-43DP0DP04 118 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 NOVP48745 357 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 IL24Q13007 206 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PMS2P11Q13670 270 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PRSS8Q16651 343 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 OR2T10Q8NGZ9 312 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 C2CD4CQ8TF44 421 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ZG16BQ96DA0 208 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 CHODLQ9H9P2 273 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 TREM2Q9NZC2 230 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 STARD10Q9Y365 291 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PHLDA3Q9Y5J5 127 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 KIAA2026Q5HYC2 2103 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PSME4Q14997 1843 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 RER1O15258 196 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 OPN1MWP04001 364 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 OPN1MW2P0DN77 364 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 OPN1MW3P0DN78 364 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 FABP4P15090 132 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 Q7L0L9 218 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 CENPVQ7Z7K6 275 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF714Q96N38 554 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 WDR54Q9H977 334 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 MMP25Q9NPA2 562 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 MIOXQ9UGB7 285 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 TAF1LQ8IZX4 1826 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 MARF1Q9Y4F3 1742 aaKnown RBP6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PPIAL4EA0A075B759 164 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PPIAL4DF5H284 164 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PPIAL4FP0DN26 164 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 TCTAP57738 103 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 FABP5Q01469 135 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 C6orf201Q7Z4U5 140 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 GALNT14Q96FL9 552 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM101Q96IK0 257 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 DUX5Q96PT3 197 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 PPIAL4AQ9Y536 164 aa6.06□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM272A0A1B0GTI8 110 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF815PA8K554 130 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 CA11O75493 328 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 DNAL4O96015 105 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 MAS1LP35410 378 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 GUCA2AQ02747 115 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF117Q03924 483 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 RELQ04864 619 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-204ENST00000423058 MRPL58Q14197 206 aaKnown RBP6.05□□□□□ -1.44
SCN1A-204ENST00000423058 PRICKLE4Q2TBC4 344 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 FAM222BQ8WU58 562 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 NRG4Q8WWG1 115 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ASB10Q8WXI3 467 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 DUSP15Q9H1R2 295 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-204ENST00000423058 SRD5A3Q9H8P0 318 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ZFP30Q9Y2G7 519 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 OR5AC1P0C628 307 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ACVR1Q04771 509 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 B3GNT9Q6UX72 402 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 Q6ZS52 159 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 TP53I13Q8NBR0 393 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-204ENST00000423058 RNF122Q9H9V4 155 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 LOC285556D6RIA3 1793 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 AHRRA9YTQ3 701 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms