RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 OXA1LQ15070 435 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 SLC35E4Q6ICL7 350 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 PLET1Q6UQ28 207 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 ZNF788Q6ZQV5 615 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 ZNRF1Q8ND25 227 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 OR5AP2Q8NGF4 316 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 CCDC107Q8WV48 283 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 TINAGL1Q9GZM7 467 aaPredicted RBP14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 Q9N2K0 584 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 NECAP2Q9NVZ3 263 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 EHFQ9NZC4 300 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 K7N7A8 449 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 SIGLEC5O15389 551 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 NDUFB3O43676 98 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 ZNF737O75373 536 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 RP2O75695 350 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 TK1P04183 234 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 GIFP27352 417 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 COL8A1P27658 744 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 GLP1RP43220 463 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 EDDM3BP56851 147 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 CDK10Q15131 360 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 ZMYND11Q15326 602 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 SRSF7Q16629 238 aaKnown RBP eCLIP14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 SCGB2B2Q4G0G5 96 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 LRRC10Q5BKY1 277 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 C6orf183Q5T699 404 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 RSBN1Q5VWQ0 802 aaPredicted RBP14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 FAM216BQ8N7L0 139 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 OR56B4Q8NH76 319 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 PRRT1Q99946 306 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 KIF25Q9UIL4 384 aa14.3□□□□□ -0.12
CCDC28B-202ENST00000421922 TRDCB7Z8K6 153 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 OVOL3O00110 214 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 NDUFB7P17568 137 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 RFX2P48378 723 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 TMEM33P57088 247 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 HLA-DRB3P79483 266 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 AVPI1Q5T686 147 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 ATPAF1Q5TC12 328 aaPredicted RBP14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 TRAT1Q6PIZ9 186 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 CCBE1Q6UXH8 406 aaPredicted RBP14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 Q6ZS49 121 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 OR4D10Q8NGI6 311 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 OR51S1Q8NGJ8 323 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 TMEM246Q9BRR3 403 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 BARX1Q9HBU1 254 aaPredicted RBP14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 MAB21L2Q9Y586 359 aa14.29□□□□□ -0.12
CCDC28B-202ENST00000421922 FABP7O15540 132 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 SSX4O60224 188 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 FSTL3O95633 263 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 IGHV2-70P01814 119 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 SLC6A1P30531 599 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 GPR6P46095 362 aaPredicted RBP14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 CCR6P51684 374 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 RBMS2Q15434 407 aaKnown RBP14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 VAX1Q5SQQ9 334 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 ARRDC1Q8N5I2 433 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 SPICQ8N5J4 248 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 MARVELD3Q96A59 401 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 COQ2Q96H96 371 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 SHARPINQ9H0F6 387 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 SLC25A10Q9UBX3 287 aaPredicted RBP14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 PCDHB10Q9UN67 800 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 USF3Q68DE3 2245 aa14.28□□□□□ -0.12
CCDC28B-202ENST00000421922 AKAP6Q13023 2319 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 CTXN2P0C2S0 81 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 SELLP14151 372 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 RPS2P15880 293 aaKnown RBP14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 P2RX3P56373 397 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 SEC61A1P61619 476 aaKnown RBP14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 ZNF787Q6DD87 383 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 IDO2Q6ZQW0 420 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 NLRC3Q7RTR2 1065 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 ZNF295-AS1Q8N0V1 137 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 GAPTQ8N292 157 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 OCEL1Q9H607 264 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 RAB9BQ9NP90 201 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 OR6C3Q9NZP0 311 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 NUBP2Q9Y5Y2 271 aa14.27□□□□□ -0.12
CCDC28B-202ENST00000421922 ITPR2Q14571 2701 aa14.27□□□□□ -0.13
CCDC28B-202ENST00000421922 IGKV1D-8A0A087WSZ0 117 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 ODAMA1E959 279 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 SDCBPO00560 298 aaPredicted RBP14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 NDUFS7O75251 213 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 GSTT2P0CG29 244 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 OR5H8P0DN80 308 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 SPNP16150 400 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 RCC1P18754 421 aaPredicted RBP14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 BTCP35070 178 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 GLIPR1P48060 266 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 PDLIM4P50479 330 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 ATP5J2P56134 94 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 PAX5Q02548 391 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 ZNF880Q6PDB4 577 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 PRR18Q8N4B5 295 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 TPRX1Q8N7U7 411 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 DUSP18Q8NEJ0 188 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 OR8B3Q8NGG8 313 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 OR4A4PQ8NGN8 299 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms