RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HEPN1Q6WQI6 88 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 ZNF561Q8N587 486 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 EXTL1Q92935 676 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 REPIN1Q9BWE0 567 aaKnown RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 LYRM2Q9NU23 88 aaPredicted RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 MRPS17Q9Y2R5 130 aaKnown RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 H0YL77 283 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 CYTIPO60759 359 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 CST7O76096 145 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 LY86O95711 162 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 SRP19P09132 144 aaKnown RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 SMIM6P0DI80 62 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 NR2C1P13056 603 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 RNPS1Q15287 305 aaKnown RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 OR56B2PQ8NGI1 322 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 HES7Q9BYE0 225 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 ZNF552Q9H707 407 aaPredicted RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 LUZP4Q9P127 313 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 METTL1Q9UBP6 276 aaKnown RBP8.43□□□□□ -1.06
SS18-203ENST00000415083 TINAGQ9UJW2 476 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 TMED3Q9Y3Q3 217 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 URGCP-MRPS24S4R325 110 aa8.43□□□□□ -1.06
SS18-203ENST00000415083 A0A096LPE4 126 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ZNF816-ZNF321PA0A0X1KG74 233 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 A0A1W2PPZ6 126 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 TNFSF12O43508 249 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 PITX3O75364 302 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 GPM6AP51674 278 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ZXDAP98168 799 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ZNF565Q8N9K5 539 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 OR14L1PQ8NHC6 308 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 PAPOLGQ9BWT3 736 aaKnown RBP8.42□□□□□ -1.06
SS18-203ENST00000415083 VSIRQ9H7M9 311 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 R4GN57 208 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 KIAA2026Q5HYC2 2103 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ERVFRD-1P60508 538 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ARL16Q0P5N6 197 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 GTF3C1Q12789 2109 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 MALLQ13021 153 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ZNF154Q13106 437 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 HAPLN4Q86UW8 402 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 COMMD1Q8N668 190 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 OR2V1Q8NHB1 315 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 MRPL30Q8TCC3 161 aaKnown RBP8.42□□□□□ -1.06
SS18-203ENST00000415083 PRDM14Q9GZV8 571 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 MED13Q9UHV7 2174 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 DNPH1O43598 174 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 GLP1RP43220 463 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ZNF726P1Q15940 193 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 HIKESHIQ53FT3 197 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 PDZD11Q5EBL8 140 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 RIPPLY2Q5TAB7 128 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 OR5C1Q8NGR4 320 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 ZNF442Q9H7R0 627 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 LIPGQ9Y5X9 500 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 BSNQ9UPA5 3926 aa8.42□□□□□ -1.06
SS18-203ENST00000415083 A0A1W2PNU3 283 aaPredicted RBP8.41□□□□□ -1.06
SS18-203ENST00000415083 HLA-HP01893 362 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 S100A8P05109 93 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 UCP1P25874 307 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 RPS10P46783 165 aaKnown RBP8.41□□□□□ -1.06
SS18-203ENST00000415083 PRDX4Q13162 271 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 SPINK14Q6IE38 97 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 OR2G3Q8NGZ4 309 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 Q8WTZ3 238 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 STRAPQ9Y3F4 350 aaKnown RBP8.41□□□□□ -1.06
SS18-203ENST00000415083 TRAV24A0A0B4J272 114 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 RBFOX3A6NFN3 312 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 HAAOP46952 286 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 HOXA4Q00056 320 aaPredicted RBP8.41□□□□□ -1.06
SS18-203ENST00000415083 ZNF324BQ6AW86 544 aaPredicted RBP8.41□□□□□ -1.06
SS18-203ENST00000415083 RAB39BQ96DA2 213 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 PRO3102Q9H379 93 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 TRIOBPQ9H2D6 2365 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 PTPRBP23467 1997 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 BORCS7-ASMTA0A0B4J1R7 106 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 TRAV39A0A0B4J263 110 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 ZNF732B4DXR9 585 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 PHOX2AO14813 284 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 CHST1O43916 411 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 LHX2P50458 406 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 FGF12P61328 243 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 ARF1P84077 181 aaKnown RBP8.41□□□□□ -1.06
SS18-203ENST00000415083 ELOBQ15370 118 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 HMGN3Q15651 99 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 FAM53AQ6NSI3 398 aaPredicted RBP8.41□□□□□ -1.06
SS18-203ENST00000415083 DPPA2Q7Z7J5 298 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 C17orf78Q8N4C9 275 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 TMEM217Q8N7C4 229 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 SMOC1Q9H4F8 434 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 KCNJ16Q9NPI9 418 aa8.41□□□□□ -1.06
SS18-203ENST00000415083 H3BQ15 152 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 PGLYRP1O75594 196 aaPredicted RBP8.4□□□□□ -1.06
SS18-203ENST00000415083 IGHV2-70P01814 119 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 NKX2-1P43699 371 aaPredicted RBP8.4□□□□□ -1.06
SS18-203ENST00000415083 RHEBQ15382 184 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 CYB561D1Q8N8Q1 229 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 CLDND2Q8NHS1 167 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 OR51M1Q9H341 326 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 PARPBPQ9NWS1 579 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms