RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TMEM123Q8N131 208 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 OR51S1Q8NGJ8 323 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 SVIPQ8NHG7 77 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 TMEM171Q8WVE6 324 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 ST6GALNAC2Q9UJ37 374 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 FZR1Q9UM11 496 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 STARD10Q9Y365 291 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 RNF115Q9Y4L5 304 aa7.41□□□□□ -1.22
SYNE1-211ENST00000413186 ERVH48-1M5A8F1 160 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 SPRY1O43609 319 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-211ENST00000413186 S100A7P31151 101 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 FAM209AQ5JX71 171 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 NHLRC1Q6VVB1 395 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 TMEM101Q96IK0 257 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 FOXC2Q99958 501 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 PKIBQ9C010 78 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 ALX4Q9H161 411 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-211ENST00000413186 ZMAT3Q9HA38 289 aaKnown RBP7.4□□□□□ -1.22
SYNE1-211ENST00000413186 CLCF1Q9UBD9 225 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 ISG15P05161 165 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 SLC9A3R2Q15599 337 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 LRRC29Q8WV35 223 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 ST8SIA2Q92186 375 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 SLC39A7Q92504 469 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 WNT5BQ9H1J7 359 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 SAP30LQ9HAJ7 183 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 RTTNQ86VV8 2226 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 TRAV38-1A0A0B4J264 116 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 OR5AL1P0C617 328 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 OR52N4Q8NGI2 321 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 RNASE6Q93091 150 aaKnown RBP7.4□□□□□ -1.22
SYNE1-211ENST00000413186 MAP6Q96JE9 813 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 VAMP8Q9BV40 100 aa7.4□□□□□ -1.22
SYNE1-211ENST00000413186 OR2F2O95006 317 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 F2RL1P55085 397 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 OR2F1Q13607 317 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 ZDHHC22Q8N966 263 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 SLC24A4Q8NFF2 622 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 OR10J5Q8NHC4 309 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 BCL2L2Q92843 193 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-211ENST00000413186 PTX4Q96A99 478 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 AUNIPQ9H7T9 357 aa7.4□□□□□ -1.23
SYNE1-211ENST00000413186 A0A1B0GW15 77 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 TMEM235A6NFC5 223 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 IFNL4K9M1U5 179 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 NDUFB6O95139 128 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 SLC6A1P30531 599 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 PRRX1P54821 245 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 DBPQ10586 325 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 ATP6V1FQ16864 119 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 TMEM91Q6ZNR0 172 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 ST6GALNAC3Q8NDV1 305 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 OR5D13Q8NGL4 314 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 GAR1Q9NY12 217 aaKnown RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 PRELID3BQ9Y3B1 194 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 MED12Q93074 2177 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 TMEM30CPA0ZSE6 113 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 C1QTNF9BB2RNN3 333 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 C1QTNF9P0C862 333 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 ZNF728P0DKX0 622 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 ZNF25P17030 456 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 CTRB1P17538 263 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 TAGLN2P37802 199 aaKnown RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 MDH2P40926 338 aaKnown RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 KIR3DL2P43630 455 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 B3GALT5-AS1P59052 145 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 RELQ04864 619 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 C19orf57Q0VDD7 668 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 ENDOGQ14249 297 aaKnown RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 ADIPOQQ15848 244 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 CTRB2Q6GPI1 263 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 TRAT1Q6PIZ9 186 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 OR5H6Q8NGV6 325 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 MIXL1Q9H2W2 232 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 OR5V1Q9UGF6 321 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 URGCP-MRPS24S4R325 110 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 TRGV10A0A0A0MS01 117 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 KRBOX1C9JBD0 128 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 FSTP19883 344 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 PLA2G5P39877 138 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 BATF2Q8N1L9 274 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 EDARADDQ8WWZ3 215 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 CCL17Q92583 94 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 AMELYQ99218 206 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 TRAF4Q9BUZ4 470 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 PECRQ9BY49 303 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 RNF7Q9UBF6 113 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 RPL36A-HNRNPH2H7BZ11 118 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 PDCD6O75340 191 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 KITLGP21583 273 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 NANOS3P60323 173 aaKnown RBP7.39□□□□□ -1.23
SYNE1-211ENST00000413186 KRTDAPP60985 99 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 SORDQ00796 357 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 LTC4SQ16873 150 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 LGI3Q8N145 548 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 MS4A3Q96HJ5 214 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 ARPC5LQ9BPX5 153 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 V9GYS6 101 aa7.39□□□□□ -1.23
SYNE1-211ENST00000413186 PPIHO43447 177 aaKnown RBP7.38□□□□□ -1.23
SYNE1-211ENST00000413186 OR10J1P30954 320 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms