RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZNF90Q03938 601 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 OR8G2PQ6IF36 304 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 HOGA1Q86XE5 327 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 OXGR1Q96P68 337 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 CALHM2Q9HA72 323 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 NAGKQ9UJ70 344 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 GDF9O60383 454 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 TSPAN2O60636 221 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 NRASP01111 189 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 GDF1P27539 372 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 TMEM50BP56557 158 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 FAHD2BQ6P2I3 314 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-206ENST00000405805 PAQR4Q8N4S7 273 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-206ENST00000405805 OR4F5Q8NH21 305 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 BCL2L2Q92843 193 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-206ENST00000405805 FAHD2AQ96GK7 314 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 OR4F4Q96R69 305 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 AURKAIP1Q9NWT8 199 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF319Q9P2F9 582 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 LHFPL6Q9Y693 200 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 E5RGE8 158 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 BMP5P22003 454 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 GALR1P47211 349 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 CNN3Q15417 329 aaKnown RBP10.43□□□□□ -0.74
HMGB1-206ENST00000405805 CDPF1Q6NVV7 123 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 CMTM2Q8TAZ6 248 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 ERGIC1Q969X5 290 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 SH3BGRL3Q9H299 93 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 NSG2Q9Y328 171 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 WASHC3Q9Y3C0 194 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 NSG1A0A0A6YYJ2 146 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 J3QR89 54 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 SHBQ15464 509 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 GUSBP11Q6P575 273 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 OR5AS1Q8N127 324 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 ARHGEF39Q8N4T4 335 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 C2orf88Q9BSF0 95 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 RNF126Q9BV68 326 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 NMES1Q9C002 83 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 CLCF1Q9UBD9 225 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 SIT1Q9Y3P8 196 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 RBFOX3A6NFN3 312 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 GNG7O60262 68 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 CD8AP01732 235 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 GLB1P16278 677 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 RUNX1Q01196 453 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 C1orf100Q5SVJ3 147 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 LYSMD4Q5XG99 296 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 PLPPR2Q96GM1 343 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 SLC26A1Q9H2B4 701 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 FER1L5A0AVI2 2057 aa10.43□□□□□ -0.74
HMGB1-206ENST00000405805 LRRK1Q38SD2 2015 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 APC2O95996 2303 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 C5orf63A6NC05 138 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 LILRA5A6NI73 299 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 A8MXE2 369 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 WDR1O75083 606 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 OR4A4PQ8NGN8 299 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 LHX4Q969G2 390 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 MRGPRX4Q96LA9 322 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 SLC25A31Q9H0C2 315 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 FAM206AQ9NX38 181 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 PTGER4P35408 488 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 ZXDAP98168 799 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 AADACL3Q5VUY0 350 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF787Q6DD87 383 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 NTNG2Q96CW9 530 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 MVB12AQ96EY5 273 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 KCNK17Q96T54 332 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 STRAPQ9Y3F4 350 aaKnown RBP10.42□□□□□ -0.74
HMGB1-206ENST00000405805 SPTAN1Q13813 2472 aaKnown RBP10.42□□□□□ -0.74
HMGB1-206ENST00000405805 FGF8P55075 233 aaPredicted RBP10.42□□□□□ -0.74
HMGB1-206ENST00000405805 ERVFRD-1P60508 538 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 ASPHD2Q6ICH7 369 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 RPS19BP1Q86WX3 136 aaKnown RBP10.42□□□□□ -0.74
HMGB1-206ENST00000405805 OR1L6Q8NGR2 347 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 OR5C1Q8NGR4 320 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 PLXNA2O75051 1894 aa10.42□□□□□ -0.74
HMGB1-206ENST00000405805 CD300LBA8K4G0 201 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 CD74P04233 296 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 MSX1P28360 303 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 PPP1CCP36873 323 aaKnown RBP10.41□□□□□ -0.74
HMGB1-206ENST00000405805 PLP2Q04941 152 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 CLN3Q13286 438 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 IZUMO4Q1ZYL8 232 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ANKRD37Q7Z713 158 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 MKXQ8IYA7 352 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 OR1P1Q8NH06 330 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 SPIN2AQ99865 258 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 SPIN2BQ9BPZ2 258 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 HINT2Q9BX68 163 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 TMEM100Q9NV29 134 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ANXA10Q9UJ72 324 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 PPP1R3CQ9UQK1 317 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 RFNGQ9Y644 331 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 SERPINE3A8MV23 424 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 KIAA1324LA8MWY0 1029 aaPredicted RBP10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ATXN7O15265 892 aaPredicted RBP10.41□□□□□ -0.74
HMGB1-206ENST00000405805 IGKV3-11P04433 115 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 CCKARP32238 428 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms