RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 BEND4Q6ZU67 534 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 CLDND2Q8NHS1 167 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 DMRT1Q9Y5R6 373 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 DNAJC13O75165 2243 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 IGHV5-10-1A0A0J9YXX1 117 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 IAPPP10997 89 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 FOXG1P55316 489 aaPredicted RBP18.01■□□□□ 0.47
CTCF-202ENST00000401394 RBM11P57052 281 aaKnown RBP18.01■□□□□ 0.47
CTCF-202ENST00000401394 CEACAM16Q2WEN9 425 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 GPR137CQ8N3F9 429 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 PRR18Q8N4B5 295 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 SPSB1Q96BD6 273 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 LYRM2Q9NU23 88 aaPredicted RBP18.01■□□□□ 0.47
CTCF-202ENST00000401394 RARRES3Q9UL19 164 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 ARGFXA6NJG6 315 aa18■□□□□ 0.47
CTCF-202ENST00000401394 CA11O75493 328 aa18■□□□□ 0.47
CTCF-202ENST00000401394 IGFBP4P22692 258 aa18■□□□□ 0.47
CTCF-202ENST00000401394 ZNF385CQ66K41 422 aaPredicted RBP18■□□□□ 0.47
CTCF-202ENST00000401394 ZNF295-AS1Q8N0V1 137 aa18■□□□□ 0.47
CTCF-202ENST00000401394 CPEB3Q8NE35 698 aaKnown RBP18■□□□□ 0.47
CTCF-202ENST00000401394 C14orf144Q96I85 54 aa18■□□□□ 0.47
CTCF-202ENST00000401394 ZNF845Q96IR2 970 aaPredicted RBP18■□□□□ 0.47
CTCF-202ENST00000401394 PLEKHF2Q9H8W4 249 aa18■□□□□ 0.47
CTCF-202ENST00000401394 CXCL13O43927 109 aa18■□□□□ 0.47
CTCF-202ENST00000401394 ARL6IP1Q15041 203 aa18■□□□□ 0.47
CTCF-202ENST00000401394 WDR74Q6RFH5 385 aaPredicted RBP18■□□□□ 0.47
CTCF-202ENST00000401394 DPPA2Q7Z7J5 298 aa18■□□□□ 0.47
CTCF-202ENST00000401394 ABHD3Q8WU67 409 aa18■□□□□ 0.47
CTCF-202ENST00000401394 TAAR3PQ9P1P4 343 aa18■□□□□ 0.47
CTCF-202ENST00000401394 SLC22A20A6NK97 555 aa18■□□□□ 0.47
CTCF-202ENST00000401394 BCAT2O15382 392 aaPredicted RBP18■□□□□ 0.47
CTCF-202ENST00000401394 GPM6AP51674 278 aa18■□□□□ 0.47
CTCF-202ENST00000401394 ARL16Q0P5N6 197 aa18■□□□□ 0.47
CTCF-202ENST00000401394 AKR1C8PQ5T2L2 129 aa18■□□□□ 0.47
CTCF-202ENST00000401394 RABEPKQ7Z6M1 372 aa18■□□□□ 0.47
CTCF-202ENST00000401394 CCDC74BQ96LY2 380 aa18■□□□□ 0.47
CTCF-202ENST00000401394 NIPSNAP3BQ9BS92 247 aa18■□□□□ 0.47
CTCF-202ENST00000401394 WNT5BQ9H1J7 359 aa18■□□□□ 0.47
CTCF-202ENST00000401394 RAB1AP62820 205 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 PRSS8Q16651 343 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 IL22RA1Q8N6P7 574 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 PLA2G3Q9NZ20 509 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 HS3ST1O14792 307 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 PITX3O75364 302 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 DEFA4P12838 97 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 LIFP15018 202 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 DEFA6Q01524 100 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 ZNF266Q14584 549 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 PCOLCEQ15113 449 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 CNN3Q15417 329 aaKnown RBP17.99■□□□□ 0.47
CTCF-202ENST00000401394 C1QL4Q86Z23 238 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 HIST3H2BBQ8N257 126 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 RPRMQ9NS64 109 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 KIAA1456Q9P272 454 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 SEMA5BQ9P283 1151 aa17.99■□□□□ 0.47
CTCF-202ENST00000401394 TVP23CQ96ET8 276 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 TREM2Q9NZC2 230 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 NCKAP5O14513 1909 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 ADAMTS20P59510 1910 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 hCG_38984A0A1B0GV85 526 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 ZNF726P1Q15940 193 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 RTL6Q6ICC9 239 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 SLC25A24Q6NUK1 477 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 IL1F10Q8WWZ1 152 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 INTS12Q96CB8 462 aaKnown RBP17.98■□□□□ 0.47
CTCF-202ENST00000401394 GTF3C1Q12789 2109 aa17.98■□□□□ 0.47
CTCF-202ENST00000401394 HOXA4Q00056 320 aaPredicted RBP17.97■□□□□ 0.47
CTCF-202ENST00000401394 RDH5Q92781 318 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 TMEM38BQ9NVV0 291 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 METTL15P1P0C7V9 234 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 CD200P41217 278 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 MRPS34P82930 218 aaKnown RBP17.97■□□□□ 0.47
CTCF-202ENST00000401394 RAB35Q15286 201 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 VASH2Q86V25 355 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 WFIKKN1Q96NZ8 548 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 LOC102725191A0A1B0GVB3 256 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 LILRA1O75019 489 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 MAS1LP35410 378 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 ELLP55199 621 aaPredicted RBP17.97■□□□□ 0.47
CTCF-202ENST00000401394 FAM53AQ6NSI3 398 aaPredicted RBP17.97■□□□□ 0.47
CTCF-202ENST00000401394 LHFPL2Q6ZUX7 228 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 CCDC71LQ8N9Z2 235 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 LFNGQ8NES3 379 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 PTRH2Q9Y3E5 179 aaKnown RBP17.97■□□□□ 0.47
CTCF-202ENST00000401394 PRR14LQ5THK1 2151 aa17.97■□□□□ 0.47
CTCF-202ENST00000401394 PPP1R2P9O14990 202 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 CCL4P13236 92 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 NKX6-1P78426 367 aaPredicted RBP17.96■□□□□ 0.47
CTCF-202ENST00000401394 NMSQ5H8A3 153 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 FAM90A2PQ658T7 463 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 KDF1Q8NAX2 398 aaPredicted RBP17.96■□□□□ 0.47
CTCF-202ENST00000401394 OR56B2PQ8NGI1 322 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 FAM210BQ96KR6 192 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 CFAP47Q6ZTR5 3102 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 SYNGR1O43759 233 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 TRAPPC6AO75865 159 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 UMODP07911 640 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 PSG2P11465 335 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 GLIPR1P48060 266 aa17.96■□□□□ 0.47
CTCF-202ENST00000401394 FOXL2NBQ6ZUU3 175 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms