RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 TMEM187Q14656 261 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 DMRTA1Q5VZB9 504 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 RABEPKQ7Z6M1 372 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 KIR2DL5AQ8N109 375 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 OR52M1Q8NGK5 317 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 TMEM18Q96B42 140 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 HIST1H2AAQ96QV6 131 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 RASL10BQ96S79 203 aa13.82□□□□□ -0.2
CHMP1A-201ENST00000397901 EML6Q6ZMW3 1958 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 SCRG1O75711 98 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 ZFP62Q8NB50 900 aaPredicted RBP13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 NABP1Q96AH0 204 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 RBMXL1Q96E39 390 aaKnown RBP13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 SPACA9Q96E40 222 aaPredicted RBP13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 ACY3Q96HD9 319 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 UCN2Q96RP3 112 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 NECAP2Q9NVZ3 263 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 PDLIM4P50479 330 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 EIF3IQ13347 325 aaKnown RBP13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 SP5Q6BEB4 398 aaPredicted RBP13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 OR11L1Q8NGX0 322 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 ZNF837Q96EG3 531 aaPredicted RBP13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 SPOCK3Q9BQ16 436 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 ABHD14AQ9BUJ0 271 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 DEFB126Q9BYW3 111 aa13.81□□□□□ -0.2
CHMP1A-201ENST00000397901 MMP7P09237 267 aaPredicted RBP13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 FGF5P12034 268 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 RPP30P78346 268 aaKnown RBP13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 FAM185AQ8N0U4 392 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 ANGPTL4Q9BY76 406 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 DECR2Q9NUI1 292 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 CACNA1EQ15878 2313 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 IGKV1-27A0A075B6S5 117 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 PPP5D1E7EU14 171 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 MDKP21741 143 aaPredicted RBP13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 RPL23AP62750 156 aaKnown RBP13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 ZNF266Q14584 549 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 FBXW12Q6X9E4 464 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 CLDND2Q8NHS1 167 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 CTDSP1Q9GZU7 261 aa13.8□□□□□ -0.2
CHMP1A-201ENST00000397901 NPIPA2E9PIF3 369 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 NPIPA3F8WFD2 350 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 G3V3Y1 287 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 CELA2AP08217 269 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 ATP6V0CP27449 155 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 PDCD1Q15116 288 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 PIGYQ3MUY2 71 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 MRPL41Q8IXM3 137 aaKnown RBP13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 SLC2A9Q9NRM0 540 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 RFNGQ9Y644 331 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 SHANK1Q9Y566 2161 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 DHHO43323 396 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 RPL29P47914 159 aaKnown RBP13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 C10orf128Q5T292 105 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 NCR3LG1Q68D85 454 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 FADS6Q8N9I5 356 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 NEK7Q8TDX7 302 aa13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 AKIRIN1Q9H9L7 192 aaPredicted RBP13.79□□□□□ -0.2
CHMP1A-201ENST00000397901 LOC102725191A0A1B0GVB3 256 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 LNP1A1A4G5 178 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 TRDCB7Z8K6 153 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 HBE1P02100 147 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 BPIFB3P59826 476 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 PMS2P11Q13670 270 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 RAET1LQ5VY80 246 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 MEX3BQ6ZN04 569 aaKnown RBP13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 LIAT1Q6ZQX7 453 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 OR14L1PQ8NHC6 308 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 TMEM54Q969K7 222 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 SPTSSAQ969W0 71 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 CHCHD2Q9Y6H1 151 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 SDK2Q58EX2 2172 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 ATXN7O15265 892 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 PHF1O43189 567 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 DUSP1P28562 367 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 OTX1P32242 354 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 ZNF880Q6PDB4 577 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 BTNL3Q6UXE8 466 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 ZNF705AQ6ZN79 300 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 C18orf12Q96KH6 178 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 ULBP2Q9BZM5 246 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 LPAR2Q9HBW0 351 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 LRFN1Q9P244 771 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 SIT1Q9Y3P8 196 aa13.78□□□□□ -0.2
CHMP1A-201ENST00000397901 ST8SIA3O43173 380 aa13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 HSPA12AO43301 675 aa13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 EWSR1Q01844 656 aaKnown RBP eCLIP13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 TLE4Q04727 773 aa13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 BATF2Q8N1L9 274 aa13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 DIRC2Q96SL1 478 aa13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 P4HTMQ9NXG6 502 aa13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 POLR3KQ9Y2Y1 108 aaPredicted RBP13.77□□□□□ -0.21
CHMP1A-201ENST00000397901 LOC102723971A0A1B0GUV8 181 aa13.76□□□□□ -0.21
CHMP1A-201ENST00000397901 SCGB1D1O95968 90 aa13.76□□□□□ -0.21
CHMP1A-201ENST00000397901 HIST1H3AP68431 136 aa13.76□□□□□ -0.21
CHMP1A-201ENST00000397901 P2RY6Q15077 328 aa13.76□□□□□ -0.21
CHMP1A-201ENST00000397901 FAM90A2PQ658T7 463 aa13.76□□□□□ -0.21
CHMP1A-201ENST00000397901 TMEM123Q8N131 208 aa13.76□□□□□ -0.21
CHMP1A-201ENST00000397901 MSI2Q96DH6 328 aaKnown RBP13.76□□□□□ -0.21
CHMP1A-201ENST00000397901 FKBP11Q9NYL4 201 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms