RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 OR8G5Q8NG78 346 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 S100PBPQ96BU1 408 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 GALNT14Q96FL9 552 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 KIRREL1Q96J84 757 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 NRIP2Q9BQI9 281 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 SLC25A15Q9Y619 301 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 MEX3AA1L020 520 aaKnown RBP12.76□□□□□ -0.37
GPC3-202ENST00000394299 PRSS44E7EML9 344 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 MPPED1O15442 326 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 TIMM8AO60220 97 aaPredicted RBP12.76□□□□□ -0.37
GPC3-202ENST00000394299 SCO1O75880 301 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 IGLV1-44P01699 117 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 LIAT1Q6ZQX7 453 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 Q6ZS49 121 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 TBC1D26Q86UD7 250 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 OR52M1Q8NGK5 317 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 SCNM1Q9BWG6 230 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 SDHAF2Q9NX18 166 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 OR1A1Q9P1Q5 309 aa12.76□□□□□ -0.37
GPC3-202ENST00000394299 hCG_1807616A0A1W2PRN6 198 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 ZSCAN5BA6NJL1 495 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 IFNA21P01568 189 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 IQCF2Q8IXL9 164 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 C18orf12Q96KH6 178 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 CNTNAP3BQ96NU0 1288 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 CNTNAP3Q9BZ76 1288 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 SLC5A7Q9GZV3 580 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 SPACA1Q9HBV2 294 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 OR2S2Q9NQN1 319 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 TP53TG5Q9Y2B4 290 aa12.75□□□□□ -0.37
GPC3-202ENST00000394299 C3orf85A0A1B0GTC6 90 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 A6NLC8 198 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 PSPNO60542 156 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 LYL1P12980 280 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 P2RY6Q15077 328 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 FAM53AQ6NSI3 398 aaPredicted RBP12.74□□□□□ -0.37
GPC3-202ENST00000394299 BEND4Q6ZU67 534 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 PDZD9Q8IXQ8 264 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 CISD2Q8N5K1 135 aaKnown RBP12.74□□□□□ -0.37
GPC3-202ENST00000394299 RBPMSQ93062 196 aaKnown RBP12.74□□□□□ -0.37
GPC3-202ENST00000394299 BOD1Q96IK1 185 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 USB1Q9BQ65 265 aaKnown RBP12.74□□□□□ -0.37
GPC3-202ENST00000394299 SYT3Q9BQG1 590 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 DUSP13Q9UII6 198 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 WASF3Q9UPY6 502 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 TUBAL3A6NHL2 446 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 M0R1B8 84 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 TUSC2O75896 110 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 MBPP02686 304 aaPredicted RBP12.74□□□□□ -0.37
GPC3-202ENST00000394299 FAM27E3Q08E93 113 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 C1orf185Q5T7R7 199 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 LINC00596Q86U02 117 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 SLC35G3Q8N808 338 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 ERRFI1Q9UJM3 462 aaPredicted RBP12.74□□□□□ -0.37
GPC3-202ENST00000394299 PRELID1Q9Y255 219 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 POLDIP2Q9Y2S7 368 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 RELNP78509 3460 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 CACNA1DQ01668 2161 aa12.74□□□□□ -0.37
GPC3-202ENST00000394299 KIR2DS1A0A191URI9 304 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 MFSD2BA6NFX1 497 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 HKR1P10072 659 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 KIR2DS4P43632 304 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 KIR2DS1Q14954 304 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 SRSF7Q16629 238 aaKnown RBP eCLIP12.73□□□□□ -0.372e-8■■■■■ 29.5
GPC3-202ENST00000394299 TMEM268Q5VZI3 342 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 ZNF565Q8N9K5 539 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 BSCL2Q96G97 398 aaPredicted RBP12.73□□□□□ -0.37
GPC3-202ENST00000394299 SUCNR1Q9BXA5 334 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 PARP12Q9H0J9 701 aaKnown RBP12.73□□□□□ -0.37
GPC3-202ENST00000394299 SH3BGRL2Q9UJC5 107 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 ZGRF1Q86YA3 2104 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 PCNX1Q96RV3 2341 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 NAAAQ02083 359 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 SPRNQ5BIV9 151 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 ZNF880Q6PDB4 577 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 VHLLQ6RSH7 139 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 SPERTQ8NA61 448 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 SMIM3Q9BZL3 60 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 TUBD1Q9UJT1 453 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 TRAPPC2LQ9UL33 140 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 MEMO1Q9Y316 297 aa12.73□□□□□ -0.37
GPC3-202ENST00000394299 MKRN2OSH3BPM6 223 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 BMP5P22003 454 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 GCH1P30793 250 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 SNTB1Q13884 538 aaKnown RBP12.72□□□□□ -0.37
GPC3-202ENST00000394299 ZNF718Q3SXZ3 478 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 ZNF324BQ6AW86 544 aaPredicted RBP12.72□□□□□ -0.37
GPC3-202ENST00000394299 SPACA3Q8IXA5 215 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 LGI3Q8N145 548 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 ANGPTL6Q8NI99 470 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 LINC00052Q96N35 136 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 AQP10Q96PS8 301 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 METRNQ9UJH8 293 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 NKX2-6A6NCS4 301 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 PROB1E7EW31 1015 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 H7C1Q1 480 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 DEDDO75618 318 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 HAND1O96004 215 aa12.72□□□□□ -0.37
GPC3-202ENST00000394299 CRYABP02511 175 aaKnown RBP12.72□□□□□ -0.37
GPC3-202ENST00000394299 HLA-DRB3P79483 266 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms