RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 GLI4P10075 376 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 EDN3P14138 238 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 HLA-DRB3P79483 266 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 PMS2P11Q13670 270 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 RSPO4Q2I0M5 234 aaPredicted RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 CEACAM21Q3KPI0 293 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 CXorf66Q5JRM2 361 aaPredicted RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 CALHM1Q8IU99 346 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 ODF3L1Q8IXM7 274 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 GAPTQ8N292 157 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 LINC00469Q8N7U9 141 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 SLAMF9Q96A28 289 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 PSMG3Q9BT73 122 aaPredicted RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 PARD6GQ9BYG4 376 aaPredicted RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 LINC00470Q9BZP3 86 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 AKIRIN1Q9H9L7 192 aaPredicted RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 P4HTMQ9NXG6 502 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 TREM2Q9NZC2 230 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 WNT16Q9UBV4 365 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 RNF115Q9Y4L5 304 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 LIPGQ9Y5X9 500 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 REV3LO60673 3130 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 A0A0C4DFX4 3053 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 TRAV20A0A0B4J274 112 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 CDRT15L2A8MXV6 281 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 CHST1O43916 411 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 NDUFS6O75380 124 aaKnown RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 ITGA3P26006 1051 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 NTF4P34130 210 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 ASCL1P50553 236 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 ACER2Q5QJU3 275 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 SUMF1Q8NBK3 374 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 Q8WTZ3 238 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 MBD3L1Q8WWY6 194 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 EDARADDQ8WWZ3 215 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 LSM10Q969L4 123 aaKnown RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 CLDN23Q96B33 292 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 P2RX4Q99571 388 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 ABHD14AQ9BUJ0 271 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 REPIN1Q9BWE0 567 aaKnown RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 CISD1Q9NZ45 108 aaKnown RBP8.58□□□□□ -1.04
COL17A1-203ENST00000393211 DOK5Q9P104 306 aa8.58□□□□□ -1.04
COL17A1-203ENST00000393211 IGKV3D-15A0A087WSY6 115 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 NPIPB11E5RHQ5 1161 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 K7ESF4 209 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 CXCL13O43927 109 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 PGLYRP1O75594 196 aaPredicted RBP8.57□□□□□ -1.04
COL17A1-203ENST00000393211 TMEM50AO95807 157 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 BCL3P20749 454 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 OMGP23515 440 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 F2RP25116 425 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 CXCL12P48061 93 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 RND2P52198 227 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 PAX9P55771 341 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 HAGHQ16775 308 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 ZNF674Q2M3X9 581 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 NCMAPQ5T1S8 102 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 PIP4P2Q8N4L2 257 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 CYB561D1Q8N8Q1 229 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 OR5A2Q8NGI9 324 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 OR10D3Q8NH80 312 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 ALKBH3Q96Q83 286 aaPredicted RBP8.57□□□□□ -1.04
COL17A1-203ENST00000393211 MAGT1Q9H0U3 335 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 TAAR3PQ9P1P4 343 aa8.57□□□□□ -1.04
COL17A1-203ENST00000393211 A0A1B0GV50 99 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 H0YL77 283 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 TRAPPC2LH3BP13 241 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 CST7O76096 145 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 CNOT4O95628 575 aaKnown RBP8.56□□□□□ -1.04
COL17A1-203ENST00000393211 SCTP09683 121 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 PATE4P0C8F1 98 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 FOLR3P41439 243 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 NOVA1P51513 510 aaKnown RBP8.56□□□□□ -1.04
COL17A1-203ENST00000393211 NDUFA6P56556 154 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 SERF2P84101 59 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 PRDX4Q13162 271 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 HERPUD1Q15011 391 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 LYSMD4Q5XG99 296 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 ZNF880Q6PDB4 577 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 ZDHHC23Q8IYP9 409 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 FGFBP3Q8TAT2 258 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 SCGB1C1Q8TD33 95 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 APOBEC3DQ96AK3 386 aaPredicted RBP8.56□□□□□ -1.04
COL17A1-203ENST00000393211 CABLES2Q9BTV7 478 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 CTDSP1Q9GZU7 261 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 CCL28Q9NRJ3 127 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 OR2W1Q9Y3N9 320 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 MMP24Q9Y5R2 645 aa8.56□□□□□ -1.04
COL17A1-203ENST00000393211 ASCC3Q8N3C0 2202 aaKnown RBP8.56□□□□□ -1.04
COL17A1-203ENST00000393211 IGKV1D-13A0A0B4J2D9 117 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 MED19A0JLT2 244 aaPredicted RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 ZNF727A8MUV8 499 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 KIAA1324LA8MWY0 1029 aaPredicted RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 ZNF587BE7ETH6 402 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 G3V3Y1 287 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 CLDN34H7C241 214 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 SS18L1O75177 396 aaPredicted RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 YIF1AO95070 293 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 CYB5R3P00387 301 aaPredicted RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 CXCL1P09341 107 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms