RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 SSC4DQ8WTU2 575 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 GLYATL2Q8WU03 294 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 RNASE6Q93091 150 aaKnown RBP10.59□□□□□ -0.71
CIITA-202ENST00000381835 SPSB1Q96BD6 273 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 BORCS8Q96FH0 119 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 MARS2Q96GW9 593 aaKnown RBP10.59□□□□□ -0.71
CIITA-202ENST00000381835 RHOFQ9HBH0 211 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 KCNJ16Q9NPI9 418 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 SLC7A11Q9UPY5 501 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 MRPS28Q9Y2Q9 187 aaKnown RBP10.59□□□□□ -0.71
CIITA-202ENST00000381835 A0A0A6YYD4 124 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 ANKRD30BLA7E2S9 258 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 CRYBA1P05813 215 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 SPP1P10451 314 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 RAC2P15153 192 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 NFYBP25208 207 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 PSG7Q13046 419 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 ALKBH6Q3KRA9 238 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 FBXL19-AS1Q494R0 122 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 C4orf17Q53FE4 359 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 PLAC9Q5JTB6 97 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 VHLLQ6RSH7 139 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 TMEM108Q6UXF1 575 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 PNLDC1Q8NA58 520 aaKnown RBP10.59□□□□□ -0.71
CIITA-202ENST00000381835 OR5H2Q8NGV7 314 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 RXFP4Q8TDU9 374 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 SCGB3A2Q96PL1 93 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 CMSS1Q9BQ75 279 aaKnown RBP10.59□□□□□ -0.71
CIITA-202ENST00000381835 NRIP2Q9BQI9 281 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 BANF2Q9H503 90 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 COA4Q9NYJ1 87 aa10.59□□□□□ -0.71
CIITA-202ENST00000381835 PQLC2LA1A4F0 135 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 ZG16O60844 167 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 CST4P01036 141 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 LYL1P12980 280 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 HIST1H1DP16402 221 aaKnown RBP10.58□□□□□ -0.72
CIITA-202ENST00000381835 CA6P23280 308 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 RBP2P50120 134 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 ZNF718Q3SXZ3 478 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 CRIP3Q6Q6R5 217 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 ZDHHC23Q8IYP9 409 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 ZFP82Q8N141 532 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 KCNG3Q8TAE7 436 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 SAT2Q96F10 170 aaPredicted RBP10.58□□□□□ -0.72
CIITA-202ENST00000381835 AQP10Q96PS8 301 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 GSKIPQ9P0R6 139 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 RCC2Q9P258 522 aaKnown RBP10.58□□□□□ -0.72
CIITA-202ENST00000381835 IGKV1-27A0A075B6S5 117 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 CDC14BO60729 498 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 CSTBP04080 98 aaKnown RBP10.58□□□□□ -0.72
CIITA-202ENST00000381835 PET100P0DJ07 73 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 MUC1P15941 1255 aaPredicted RBP10.58□□□□□ -0.72
CIITA-202ENST00000381835 PTAFRP25105 342 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 GCH1P30793 250 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 CAV2P51636 162 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 FUT6P51993 359 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 RAB32Q13637 225 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 ARFRP1Q13795 201 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 ANKRD55Q3KP44 614 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 FAM219AQ8IW50 185 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 OR51F2Q8NH61 342 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 LINC01560Q8TB33 94 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 OR10C1Q96KK4 312 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 TECTBQ96PL2 329 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 TMEM59Q9BXS4 323 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 SLC5A7Q9GZV3 580 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 HCFC1P51610 2035 aa10.58□□□□□ -0.72
CIITA-202ENST00000381835 DPRXA6NFQ7 191 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 RNASEK-C17orf49H0YIS7 233 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 MED6O75586 246 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 HEXAP06865 529 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 AMY2BP19961 511 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 FPR2P25090 351 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 PTGFRP43088 359 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 KCNJ3P48549 501 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 GPM6AP51674 278 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 S100A10P60903 97 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 EIF5AP63241 154 aaKnown RBP10.57□□□□□ -0.72
CIITA-202ENST00000381835 SUPT4H1P63272 117 aaKnown RBP10.57□□□□□ -0.72
CIITA-202ENST00000381835 BSPH1Q075Z2 132 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 EIF5AL1Q6IS14 154 aaKnown RBP10.57□□□□□ -0.72
CIITA-202ENST00000381835 LHFPL2Q6ZUX7 228 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 C1QL2Q7Z5L3 287 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 HPSE2Q8WWQ2 592 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 SMIM8Q96KF7 97 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 C2orf50Q96LR7 162 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 HIST1H2AAQ96QV6 131 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 RTBDNQ9BSG5 229 aaPredicted RBP10.57□□□□□ -0.72
CIITA-202ENST00000381835 ST6GALNAC5Q9BVH7 336 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 ELL3Q9HB65 397 aaPredicted RBP10.57□□□□□ -0.72
CIITA-202ENST00000381835 TAF9BQ9HBM6 251 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 ANAPC10Q9UM13 185 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 ZNF462Q96JM2 2506 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 A0A1W2PP11 408 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 CEACAM18A8MTB9 384 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 IQCF6A8MYZ5 107 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 SPRY1O43609 319 aaPredicted RBP10.57□□□□□ -0.72
CIITA-202ENST00000381835 CRTAPO75718 401 aaPredicted RBP10.57□□□□□ -0.72
CIITA-202ENST00000381835 HTR3BO95264 441 aa10.57□□□□□ -0.72
CIITA-202ENST00000381835 SFTA3P0C7M3 94 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms