RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TCFL5Q9UL49 500 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 PAM16Q9Y3D7 125 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 SPAG17Q6Q759 2223 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 CTGFP29279 349 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 PLAURQ03405 335 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 ELOBQ15370 118 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 ZNF426Q9BUY5 554 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 RGS13O14921 159 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 TWIST1Q15672 202 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 SSX8Q7RTT4 187 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 OR2T10Q8NGZ9 312 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 OR4C12Q96R67 309 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 TOPAZ1Q8N9V7 1692 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 SEMA7AO75326 666 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 NMUP48645 174 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 DLX1P56177 255 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 TMEM211Q6ICI0 200 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 LINC00299Q6ZSB3 139 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 LIMS2Q7Z4I7 341 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 BRWD1Q9NSI6 2320 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 AP4M1O00189 453 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 F12P00748 615 aaPredicted RBP12.04□□□□□ -0.48
COL4A1-201ENST00000375820 CD81P60033 236 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 SLC17A5Q9NRA2 495 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 PRSS50Q9UI38 385 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 UQCRFS1P47985 274 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 TRA2AQ13595 282 aaKnown RBP eCLIP12.04□□□□□ -0.48
COL4A1-201ENST00000375820 ZAR1Q86SH2 424 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 VN1R17PQ8TDU5 208 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 NPAS1Q99742 590 aa12.04□□□□□ -0.48
COL4A1-201ENST00000375820 SCN3AQ9NY46 2000 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 PRR35P0CG20 571 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 DRD3P35462 400 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 NXPH1P58417 271 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 ANXA10Q9UJ72 324 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 SIGLEC5O15389 551 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 TBX19O60806 448 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 BRS3P32247 399 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 SIGLEC14Q08ET2 396 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 TMEM255AQ5JRV8 349 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 FAHD2BQ6P2I3 314 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 OR1N2Q8NGR9 330 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 FAHD2AQ96GK7 314 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 COMPP49747 757 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 PTX4Q96A99 478 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 Q9N2K0 584 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 SLC52A3Q9NQ40 469 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 PLAUP00749 431 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 PPP1CCP36873 323 aaKnown RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 TAS2R60P59551 318 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 COL10A1Q03692 680 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 ZNF502Q8TBZ5 544 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 ZNF764Q96H86 408 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 CHODLQ9H9P2 273 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 LYRM2Q9NU23 88 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 RCC2Q9P258 522 aaKnown RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 MRPS18BQ9Y676 258 aaKnown RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 BTAF1O14981 1849 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 HAX1O00165 279 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 ACAA1P09110 424 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 HOXA4Q00056 320 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 MMDQ15546 238 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 JMJD6Q6NYC1 403 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 C16orf82Q7Z2V1 217 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 SPICQ8N5J4 248 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 ADAMTS17Q8TE56 1095 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 PACRGQ96M98 296 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 KCNMB2Q9Y691 235 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 NRXN3Q9Y4C0 1643 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 RCC1P18754 421 aaPredicted RBP12.03□□□□□ -0.48
COL4A1-201ENST00000375820 HERVK_113P61574 105 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 Q8WTZ3 238 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 PRDM14Q9GZV8 571 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 RAB33BQ9H082 229 aa12.03□□□□□ -0.48
COL4A1-201ENST00000375820 EIF3GO75821 320 aaKnown RBP eCLIP12.02□□□□□ -0.48
COL4A1-201ENST00000375820 GUCA2BQ16661 112 aa12.02□□□□□ -0.48
COL4A1-201ENST00000375820 SPANXN1Q5VSR9 72 aa12.02□□□□□ -0.48
COL4A1-201ENST00000375820 TMEM251Q8N6I4 163 aa12.02□□□□□ -0.48
COL4A1-201ENST00000375820 FAM216AQ8WUB2 273 aa12.02□□□□□ -0.48
COL4A1-201ENST00000375820 OR2J1Q9GZK6 312 aa12.02□□□□□ -0.48
COL4A1-201ENST00000375820 ATG2BQ96BY7 2078 aa12.02□□□□□ -0.48
COL4A1-201ENST00000375820 IGKV3OR2-268A0A0C4DH90 116 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 SNURFLB1AK76 121 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 CCL21O00585 134 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 RAB29O14966 203 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 APCSP02743 223 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 ZNF25P17030 456 aaPredicted RBP12.02□□□□□ -0.49
COL4A1-201ENST00000375820 BTF3P20290 206 aaKnown RBP12.02□□□□□ -0.49
COL4A1-201ENST00000375820 ID4P47928 161 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 LOXL3P58215 753 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 ANKRD55Q3KP44 614 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 WDR73Q6P4I2 378 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 ZNF383Q8NA42 475 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 ST6GAL2Q96JF0 529 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 RNF7Q9UBF6 113 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 CCL8P80075 99 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 OR6X1Q8NH79 312 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 DPH3Q96FX2 82 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 OR2H1Q9GZK4 316 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 TMEM167BQ9NRX6 74 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms