RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 EXTL1Q92935 676 aa18.18■□□□□ 0.5
UPF3A-202ENST00000375299 RCC1LQ96I51 464 aaKnown RBP18.18■□□□□ 0.5
UPF3A-202ENST00000375299 GPHA2Q96T91 129 aa18.18■□□□□ 0.5
UPF3A-202ENST00000375299 CISD1Q9NZ45 108 aaKnown RBP18.18■□□□□ 0.5
UPF3A-202ENST00000375299 DFFBO76075 338 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 IFNA10P01566 189 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 TK1P04183 234 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 RNF115Q9Y4L5 304 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 A0A1B0GU03 582 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 DDTP30046 118 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 FOXO1Q12778 655 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 ZNF385CQ66K41 422 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-202ENST00000375299 C5orf24Q7Z6I8 188 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 THNSL2Q86YJ6 484 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 CALHM1Q8IU99 346 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 H1FOOQ8IZA3 346 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-202ENST00000375299 BATF2Q8N1L9 274 aa18.17■□□□□ 0.5
UPF3A-202ENST00000375299 A0A1B0GV90 55 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 SLC22A20A6NK97 555 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 TSTD3H0UI37 97 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 TOX3O15405 576 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-202ENST00000375299 ZNF92Q03936 586 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 STX12Q86Y82 276 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 ZNF611Q8N823 705 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 PACRGQ96M98 296 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-202ENST00000375299 Q9N2K0 584 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 TMEM38BQ9NVV0 291 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 IGKV1D-13A0A0B4J2D9 117 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 TNFSF11O14788 317 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 PHOX2AO14813 284 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 PATE4P0C8F1 98 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 IGKV1-13P0DP09 117 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 BCL2P10415 239 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 NPBWR2P48146 333 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 TAAR3PQ9P1P4 343 aa18.16■□□□□ 0.5
UPF3A-202ENST00000375299 A0A0J9YW62 118 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 ZNF816-ZNF321PA0A0X1KG74 233 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 IFNA5P01569 189 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 LIFP15018 202 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 DSCR4P56555 118 aaPredicted RBP18.15■□□□□ 0.5
UPF3A-202ENST00000375299 SRSF7Q16629 238 aaKnown RBP eCLIP18.15■□□□□ 0.5
UPF3A-202ENST00000375299 C4orf17Q53FE4 359 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 SLC25A24Q6NUK1 477 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 SLC25A26Q70HW3 274 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 OR5D13Q8NGL4 314 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 DNASE2BQ8WZ79 361 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 IL22RA2Q969J5 263 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 POM121Q96HA1 1249 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 MEGF10Q96KG7 1140 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 TECTBQ96PL2 329 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 SRXN1Q9BYN0 137 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 CRLF2Q9HC73 371 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 RARRES3Q9UL19 164 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 SDK1Q7Z5N4 2213 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 ZFP92A6NM28 416 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 ZIC3O60481 467 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 SCTP09683 121 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 MPV17LQ2QL34 196 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 PRO1933Q9H354 126 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 CCL28Q9NRJ3 127 aa18.15■□□□□ 0.5
UPF3A-202ENST00000375299 CABIN1Q9Y6J0 2220 aa18.14■□□□□ 0.5
UPF3A-202ENST00000375299 TRBV24-1A0A075B6N3 115 aa18.14■□□□□ 0.49
UPF3A-202ENST00000375299 PGA5P0DJD9 388 aa18.14■□□□□ 0.49
UPF3A-202ENST00000375299 B4GALT1P15291 398 aa18.14■□□□□ 0.49
UPF3A-202ENST00000375299 PSG4Q00888 419 aa18.14■□□□□ 0.49
UPF3A-202ENST00000375299 ZFP36L1Q07352 338 aaKnown RBP18.14■□□□□ 0.49
UPF3A-202ENST00000375299 ZNF787Q6DD87 383 aa18.14■□□□□ 0.49
UPF3A-202ENST00000375299 HIST1H2BLQ99880 126 aa18.14■□□□□ 0.49
UPF3A-202ENST00000375299 SDF2L1Q9HCN8 221 aa18.14■□□□□ 0.49
UPF3A-202ENST00000375299 MRPS17Q9Y2R5 130 aaKnown RBP18.14■□□□□ 0.49
UPF3A-202ENST00000375299 ASCC3Q8N3C0 2202 aaKnown RBP18.14■□□□□ 0.49
UPF3A-202ENST00000375299 A0A087X0M5 115 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 A0A1B0GX30 115 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A10PA6NDY2 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A18PA6NE21 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A16PA6NEW6 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A20PA6NIJ5 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A8PA6NJQ4 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A7PA6NKC0 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A22PA8MWA6 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A12PA8MX19 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A5PA8MXJ8 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A23PA8MXZ1 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 H0Y980 276 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 TUSC2O75896 110 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A15PP0C7V4 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A13PP0C7W8 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A14PP0C7W9 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 FAM90A24PP0C7X0 464 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 HERPUD1Q15011 391 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 UNQ6494/PRO21346Q6UXR6 183 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 OR5R1Q8NH85 324 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 OR2V1Q8NHB1 315 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 ZNF665Q9H7R5 613 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 SMCO3A2RU48 225 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 CELA2AP08217 269 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 RNF224P0DH78 156 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 CCL3P10147 92 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 RPS18P62269 152 aaKnown RBP18.13■□□□□ 0.49
UPF3A-202ENST00000375299 TRIM61Q5EBN2 209 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms